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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1095.8
Min RPKM: 25.8
Std RPKM: 165.9
Median RPKM: 188.0
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
1095.8
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
716.7
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
644.7
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
638.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
552.2
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
546.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
526.7
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
427.4
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
409.5
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
393.6
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
393.2
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
362.5
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
327.1
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
324.9
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
307.9
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
307.6
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
306.7
GTEX-S341-1226-SM-4AD5S
40-49 years, female
298.0
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
295.4
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
289.8
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
289.4
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
286.4
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
281.2
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
273.6
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
271.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
270.6
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
261.2
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
257.9
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
253.3
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
252.1
GTEX-QCQG-1226-SM-48U23
50-59 years, female
234.1
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
232.6
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
229.9
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
221.0
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
216.8
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
215.0
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
212.5
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
210.0
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
209.0
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
207.1
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
204.2
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
202.2
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
198.5
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
197.6
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
197.3
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
192.9
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
192.3
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
188.3
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
187.7
GTEX-11I78-2026-SM-5987C
50-59 years, female
186.2
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
182.3
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
180.9
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
179.9
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
173.5
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
173.1
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
170.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
168.4
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
155.9
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
153.7
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
153.2
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
150.3
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
143.4
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
142.0
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
134.1
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
131.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
129.9
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
128.3
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
120.7
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
119.1
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
112.6
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
110.7
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
110.2
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
106.5
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
105.6
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
104.8
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
103.8
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
103.7
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
101.7
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
93.7
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
87.0
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
74.8
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
69.6
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
68.4
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
67.8
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
65.8
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
54.3
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
54.2
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
53.6
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
51.4
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
47.6
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
38.5
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
37.8
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
35.3
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
30.4
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
28.7
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
25.8
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.