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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 4005.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 3454.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 3034.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 3047.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 3314.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 3833.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 3742
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 3457.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1202.1
Min RPKM: 155.4
Std RPKM: 144.5
Median RPKM: 475.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
1202.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
956.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
947.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
802.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
786.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
771.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
767.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
724.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
694.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
694.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
672.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
649.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
648.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
639.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
639.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
637.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
621.6
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
613.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
604.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
598.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
590.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
579.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
573.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
568.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
567.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
565.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
562.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
560.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
560.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
552.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
542.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
539.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
537.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
532.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
530.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
529.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
524.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
522.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
520.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
519.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
518.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
511.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
511.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
507.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
504.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
502.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
502.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
501.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
500.5
GTEX-YECK-1926-SM-4W21H
60-69 years, male
497.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
494.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
494.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
494.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
494.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
490.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
490.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
482.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
481.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
479.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
475.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
474.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
474.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
472.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
471.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
471.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
468.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
466.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
463.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
460.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
460.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
458.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
457.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
457.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
455.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
447.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
446.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
445.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
440.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
434.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
434.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
428.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
426.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
422.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
420.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
417.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
417.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
417.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
416.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
412.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
412.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
410.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
408.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
407.9
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
407.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
399.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
398.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
397.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
381.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
371.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
370.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
370.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
369.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
367.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
363.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
357.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
346.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
339.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
334.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
334.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
329.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
327.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
314.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
311.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
301.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
295.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
292.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
290.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
220.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
155.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.