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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 99.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 9.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 30.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 46.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 252.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 70.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 8.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 3.1
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2996.5
Min RPKM: 0.1
Std RPKM: 394.3
Median RPKM: 52.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
2996.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
1506.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
1311.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1200.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
1164.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
978.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
970.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
887.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
862.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
840.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
675.2
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
672.2
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
626.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
562.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
457.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
457.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
410.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
407.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
350.8
GTEX-X261-1726-SM-4PQYT
50-59 years, male
347.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
315.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
309.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
302.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
268.8
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
267.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
265.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
260.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
248.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
238.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
236.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
228.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
226.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
207.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
192.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
186.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
186.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
181.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
175.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
168.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
154.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
139.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
125.9
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
119.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
119.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
116.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
106.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
102.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
99.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
95.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
85.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
84.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
70.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
69.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
66.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
58.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
57.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
56.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
53.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
52.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
52.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
50.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
49.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
47.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
46.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
45.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
44.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
43.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
43.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
41.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
40.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
36.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
35.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
32.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
31.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
30.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
30.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
29.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
28.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
27.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
26.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
26.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
24.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
22.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
21.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
21.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
18.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
17.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
15.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
15.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
15.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
13.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
13.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
11.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
11.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
10.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
10.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
9.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
9.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
7.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
6.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
6.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
6.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
5.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
5.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
5.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
5.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
5.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
5.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
5.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
4.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
4.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
3.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
3.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
2.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
0.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
0.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
0.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
0.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
