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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 256.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 179.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 144.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 282.4
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 223.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 186.6
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 297.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 358
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 195.6
Min RPKM: 24.6
Std RPKM: 37.3
Median RPKM: 114.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
195.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
185.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
185.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
180.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
177.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
159.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
156.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
156.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
154.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
153.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
152.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
150.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
149.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
149.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
147.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
147.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
146.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
146.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
145.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
145.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
144.6
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
143.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
142.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
141.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
140.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
140.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
137.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
136.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
134.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
134.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
133.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
132.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
131.8
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
131.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
129.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
129.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
129.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
128.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
128.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
127.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
127.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
125.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
125.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
124.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
124.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
124.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
123.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
123.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
122.0
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
120.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
119.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
118.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
118.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
118.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
118.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
118.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
117.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
116.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
116.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
114.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
114.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
112.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
111.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
109.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
106.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
104.5
GTEX-YECK-1926-SM-4W21H
60-69 years, male
102.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
101.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
100.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
100.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
99.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
98.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
97.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
97.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
97.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
96.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
95.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
93.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
93.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
92.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
92.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
91.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
91.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
89.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
88.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
81.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
80.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
79.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
77.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
77.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
76.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
76.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
75.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
74.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
74.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
71.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
69.7
GTEX-S33H-1626-SM-4AD68
30-39 years, male
67.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
67.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
66.5
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
64.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
62.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
58.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
57.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
57.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
56.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
55.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
53.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
51.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
51.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
49.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
48.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
44.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
44.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
41.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
35.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
33.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
31.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
24.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.