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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1229.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1352.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1600.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1871.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 2100.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1427.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 3059.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 2760.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1931.8
Min RPKM: 193.2
Std RPKM: 368.9
Median RPKM: 898.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1931.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
1717.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1682.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
1673.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1604.4
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
1592.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
1576.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1575.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1563.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
1548.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1545.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
1533.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1499.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
1489.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1450.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
1377.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
1360.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
1355.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
1338.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
1323.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1270.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1264.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
1254.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1252.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
1251.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
1251.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1243.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1235.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
1199.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
1168.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
1155.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
1087.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1087.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1073.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1066.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
1058.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
1055.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1055.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
1050.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
1044.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
1026.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
1022.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
1012.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
1008.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1002.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
981.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
979.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
971.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
956.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
955.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
953.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
946.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
939.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
932.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
929.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
922.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
920.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
917.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
907.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
898.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
892.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
891.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
885.9
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
882.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
860.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
856.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
840.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
840.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
839.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
838.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
837.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
823.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
780.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
768.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
729.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
703.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
700.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
697.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
697.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
692.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
687.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
683.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
664.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
659.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
657.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
645.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
645.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
642.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
628.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
620.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
620.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
618.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
609.1
GTEX-RN64-1826-SM-48FDV
50-59 years, male
601.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
599.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
592.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
575.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
575.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
560.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
544.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
538.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
527.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
526.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
524.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
493.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
486.5
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
485.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
482.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
464.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
460.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
435.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
434.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
423.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
420.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
401.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
319.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
318.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
312.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
193.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.