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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 151.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 939.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 71.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 221
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 710.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 195.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 325.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 322.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 15362.8
Min RPKM: 6.8
Std RPKM: 4065.2
Median RPKM: 3844.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
15362.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
14924.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
13753.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
13316.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
13189.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
13159.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
12527.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
12181.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
11770.9
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
11761.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
11549.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
11295.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
11104.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
10209.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
9917.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
9331.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
9250.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
8572.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
8528.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
8334.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
8189.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
7899.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
7637.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
7445.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
7313.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
7299.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
7207.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
7069.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
7052.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
6757.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
6675.4
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
6573.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
6423.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
6363.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
6055.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
5797.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
5721.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
5664.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
5598.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
5490.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
5429.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
5378.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
5356.2
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
5293.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
5190.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
5120.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
5011.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
4858.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
4536.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
4478.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
4350.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
4304.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
4294.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
4210.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
4186.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
4143.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
4139.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
3956.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
3882.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
3844.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
3787.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
3780.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
3292.0
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
3241.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
3173.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
3086.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
3070.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
2863.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
2707.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
2494.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
2342.4
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
2298.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
2261.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
2039.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1761.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
1539.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
1421.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
1329.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1282.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
1282.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
1270.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1008.2
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
953.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
875.5
GTEX-YECK-1926-SM-4W21H
60-69 years, male
780.1
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
764.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
750.5
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
707.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
686.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
439.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
428.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
347.7
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
329.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
319.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
308.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
259.9
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
194.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
184.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
174.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
165.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
113.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
93.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
89.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
84.9
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
73.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
56.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
47.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
45.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
34.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
32.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
27.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
25.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
23.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
23.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
14.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
8.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
7.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
7.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
6.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.