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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 454.3
Min RPKM: 131.0
Std RPKM: 66.6
Median RPKM: 234.3
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
454.3
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
452.9
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
437.8
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
382.3
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
370.7
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
358.7
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
355.5
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
351.6
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
340.1
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
337.9
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
336.0
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
328.5
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
323.8
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
322.5
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
322.5
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
309.1
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
304.6
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
303.8
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
302.5
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
301.9
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
299.8
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
296.8
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
295.3
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
289.6
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
289.2
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
288.3
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
286.3
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
283.1
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
281.6
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
277.3
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
274.2
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
272.8
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
259.6
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
258.6
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
258.3
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
256.4
GTEX-QCQG-1226-SM-48U23
50-59 years, female
253.8
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
252.6
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
250.5
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
250.3
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
249.5
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
248.5
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
246.9
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
244.8
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
243.1
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
242.5
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
237.9
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
235.2
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
233.4
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
233.1
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
231.6
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
229.1
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
225.6
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
225.6
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
225.1
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
224.3
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
224.2
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
222.8
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
221.6
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
219.2
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
215.4
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
215.1
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
215.1
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
213.7
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
213.6
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
211.8
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
211.6
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
210.8
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
210.4
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
210.4
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
207.8
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
206.9
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
206.3
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
203.4
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
202.8
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
201.1
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
200.4
GTEX-11I78-2026-SM-5987C
50-59 years, female
197.8
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
197.6
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
195.9
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
194.2
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
192.6
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
189.3
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
188.5
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
184.4
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
182.2
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
177.4
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
177.2
GTEX-S341-1226-SM-4AD5S
40-49 years, female
173.4
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
159.6
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
158.3
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
141.9
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
137.1
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
133.7
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
132.9
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
131.0
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.