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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 569.8
Min RPKM: 35.3
Std RPKM: 126.0
Median RPKM: 207.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
569.8
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
496.8
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
494.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
478.2
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
469.7
GTEX-1122O-1326-SM-5H11F
60-69 years, female
450.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
447.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
442.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
416.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
397.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
397.2
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
392.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
384.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
372.2
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
371.7
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
365.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
359.5
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
359.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
354.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
346.2
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
342.9
GTEX-13113-1226-SM-5EGHT
60-69 years, female
335.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
333.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
332.8
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
322.3
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
318.0
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
313.0
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
305.7
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
299.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
296.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
291.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
287.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
286.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
282.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
272.9
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
266.7
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
263.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
260.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
241.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
229.9
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
229.3
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
220.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
209.4
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
209.0
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
205.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
197.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
197.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
196.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
195.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
195.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
195.0
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
194.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
193.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
189.9
GTEX-13O61-1326-SM-5KM31
60-69 years, male
183.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
180.0
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
179.7
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
176.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
163.9
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
161.4
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
160.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
153.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
150.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
146.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
137.0
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
133.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
133.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
119.6
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
116.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
116.4
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
115.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
115.2
GTEX-1192X-2526-SM-59868
50-59 years, male
109.0
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
108.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
107.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
99.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
96.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
95.4
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
92.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
80.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
79.9
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
75.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
60.4
GTEX-117YX-0326-SM-5GICL
50-59 years, male
58.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
56.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
53.3
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
48.3
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
35.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.