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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 83
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 73.9
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 177.2
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 66.1
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 47.3
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 66.2
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 94.5
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 96
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 102.2
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 53.1
Min RPKM: 5.9
Std RPKM: 8.8
Median RPKM: 24.5
GTEX-12WSM-1326-SM-5GCP9
60-69 years, male
53.1
GTEX-OIZI-0126-SM-3NB13
40-49 years, male
52.4
GTEX-14A6H-2326-SM-5Q5B5
30-39 years, male
51.3
GTEX-11P7K-1026-SM-5HL6Y
30-39 years, male
47.0
GTEX-147F4-0626-SM-5LUAK
50-59 years, male
45.3
GTEX-WHSB-2126-SM-4M1XF
50-59 years, male
44.7
GTEX-ZAB4-0126-SM-5CVMG
40-49 years, male
43.1
GTEX-YB5E-1926-SM-5IFIG
40-49 years, male
42.2
GTEX-ZDTT-2026-SM-5K7TY
60-69 years, male
41.2
GTEX-145LT-0426-SM-5LUAP
40-49 years, male
40.9
GTEX-Y8E4-2226-SM-5LU94
40-49 years, male
40.2
GTEX-1399Q-2826-SM-5IJEZ
40-49 years, male
40.0
GTEX-PLZ5-1526-SM-3P5ZX
50-59 years, male
39.6
GTEX-WFG8-1926-SM-4LVM1
20-29 years, male
39.6
GTEX-RN64-2326-SM-48FDW
50-59 years, male
38.9
GTEX-QV44-1726-SM-4R1KG
50-59 years, male
38.2
GTEX-ZTX8-1126-SM-51MRM
20-29 years, male
38.1
GTEX-Y9LG-1726-SM-4VBQE
30-39 years, male
38.0
GTEX-1399R-1626-SM-5P9GG
30-39 years, male
37.7
GTEX-WFON-2026-SM-4LVMW
40-49 years, male
37.7
GTEX-S33H-0126-SM-4AD62
30-39 years, male
37.3
GTEX-11WQK-2826-SM-5EQKH
50-59 years, male
37.1
GTEX-13OW6-0126-SM-5IJGM
50-59 years, male
37.0
GTEX-YF7O-2026-SM-4W1YE
50-59 years, male
36.6
GTEX-YFCO-1726-SM-4W21S
40-49 years, male
36.2
GTEX-O5YT-2126-SM-3MJGD
20-29 years, male
35.2
GTEX-VJYA-1426-SM-4KL1Y
60-69 years, male
35.2
GTEX-YJ89-0626-SM-4TT3Z
60-69 years, male
34.7
GTEX-11ONC-2226-SM-5HL6D
60-69 years, male
34.1
GTEX-13N2G-0126-SM-5N9DV
60-69 years, male
33.5
GTEX-QMRM-1526-SM-4R1K6
50-59 years, male
33.4
GTEX-U3ZH-1526-SM-4DXV1
30-39 years, male
33.0
GTEX-144GN-1626-SM-5Q5BU
50-59 years, male
31.9
GTEX-XMK1-2026-SM-4B65K
40-49 years, male
31.8
GTEX-XPVG-2226-SM-4B65U
50-59 years, male
31.5
GTEX-11TT1-2226-SM-5GU6B
20-29 years, male
31.1
GTEX-U8T8-1126-SM-4DXUE
60-69 years, male
31.0
GTEX-13FTW-1326-SM-5LZZD
40-49 years, male
30.6
GTEX-ZZ64-1126-SM-5GZXY
20-29 years, male
30.6
GTEX-ZQUD-2026-SM-51MSM
30-39 years, male
30.5
GTEX-13NYB-2226-SM-5MR58
40-49 years, male
30.4
GTEX-P4QR-0226-SM-3NMCH
60-69 years, male
30.0
GTEX-11P82-1526-SM-5BC5M
20-29 years, male
29.9
GTEX-NFK9-0126-SM-3LK5H
40-49 years, male
29.9
GTEX-XPT6-1626-SM-4B655
20-29 years, male
29.8
GTEX-139T6-1226-SM-5IFFC
50-59 years, male
29.6
GTEX-SUCS-1326-SM-4DM5T
70-79 years, male
29.6
GTEX-OIZH-2126-SM-3NB1P
50-59 years, male
29.5
GTEX-X3Y1-2626-SM-4PQZI
40-49 years, male
29.5
GTEX-RWSA-2426-SM-47JXR
40-49 years, male
29.4
GTEX-U4B1-1526-SM-4DXSL
40-49 years, male
29.3
GTEX-S3XE-1526-SM-4AD5A
50-59 years, male
29.2
GTEX-139TT-2226-SM-5LZWO
60-69 years, male
28.9
GTEX-11O72-0726-SM-5P9GO
40-49 years, male
28.6
GTEX-R55D-0126-SM-48FEL
50-59 years, male
28.6
GTEX-12C56-1426-SM-5FQSW
20-29 years, male
28.0
GTEX-P4QS-2126-SM-3NMCF
60-69 years, male
27.7
GTEX-YEC4-1526-SM-4W1YU
40-49 years, male
27.7
GTEX-X261-2326-SM-4PQYU
50-59 years, male
27.6
GTEX-OXRL-2126-SM-3NM98
50-59 years, male
27.5
GTEX-PW2O-1426-SM-48TCD
20-29 years, male
27.4
GTEX-11EI6-2226-SM-5EGJM
60-69 years, male
27.3
GTEX-13OVH-0726-SM-5N9BU
70-79 years, male
27.2
GTEX-R55C-1426-SM-48FED
40-49 years, male
27.1
GTEX-S7SE-0326-SM-4AT5Q
50-59 years, male
27.1
GTEX-12WSI-2126-SM-5GCMV
50-59 years, male
26.8
GTEX-QLQ7-1426-SM-4R1JX
60-69 years, male
26.8
GTEX-XGQ4-2026-SM-4AT6G
50-59 years, male
26.8
GTEX-ZT9X-1426-SM-5DUX1
40-49 years, male
26.6
GTEX-147JS-0126-SM-5S2TW
60-69 years, male
26.5
GTEX-R55E-0726-SM-48FCZ
20-29 years, male
26.0
GTEX-ZV7C-2026-SM-5NQ8F
50-59 years, male
25.9
GTEX-QEG5-0126-SM-4R1JR
20-29 years, male
25.8
GTEX-T5JC-0726-SM-4DM55
20-29 years, male
25.8
GTEX-ZVTK-0126-SM-57WDG
20-29 years, male
25.8
GTEX-11DXZ-2126-SM-59881
50-59 years, male
25.7
GTEX-1339X-1926-SM-5PNVP
40-49 years, male
25.7
GTEX-13O61-2026-SM-5J2M6
60-69 years, male
25.6
GTEX-ZPU1-2126-SM-57WED
40-49 years, male
25.6
GTEX-ZVZP-2226-SM-57WBF
50-59 years, male
25.5
GTEX-13NZB-2026-SM-5MR4M
30-39 years, male
25.4
GTEX-SNMC-1026-SM-4DM7K
20-29 years, male
25.4
GTEX-RM2N-1326-SM-48FCW
50-59 years, male
25.1
GTEX-OOBJ-2126-SM-3NB1N
60-69 years, male
24.8
GTEX-ZYFC-0126-SM-5GIEH
50-59 years, male
24.7
GTEX-12696-0226-SM-5EGL3
60-69 years, male
24.6
GTEX-13O21-1226-SM-5J2MK
50-59 years, male
24.4
GTEX-U3ZM-1626-SM-4DXSK
40-49 years, male
24.4
GTEX-QLQW-1026-SM-447A9
30-39 years, male
24.3
GTEX-V955-1926-SM-4KL1L
60-69 years, male
24.2
GTEX-1212Z-0326-SM-5FQSJ
60-69 years, male
24.1
GTEX-ZUA1-2726-SM-59HLJ
40-49 years, male
24.0
GTEX-TKQ1-0926-SM-4DXU2
30-39 years, male
23.9
GTEX-144GL-0726-SM-5LU4P
50-59 years, male
23.8
GTEX-V1D1-2126-SM-4JBH4
50-59 years, male
23.8
GTEX-Y5V6-1726-SM-4VDSZ
60-69 years, male
23.7
GTEX-TKQ2-1526-SM-4DXUN
50-59 years, male
23.5
GTEX-13111-1526-SM-5EGJX
50-59 years, male
23.4
GTEX-ZDYS-1326-SM-5IJFF
50-59 years, male
23.4
GTEX-ZYT6-2726-SM-5GICP
30-39 years, male
23.3
GTEX-ZA64-1626-SM-5CVME
20-29 years, male
23.2
GTEX-Q2AH-1526-SM-48TZG
40-49 years, male
22.9
GTEX-WVLH-2626-SM-4MVNV
50-59 years, male
22.8
GTEX-ZT9W-2226-SM-57WFU
50-59 years, male
22.8
GTEX-T8EM-0126-SM-4DM5R
40-49 years, male
22.7
GTEX-111CU-1726-SM-5EGHM
50-59 years, male
22.6
GTEX-14753-0626-SM-5Q5CY
60-69 years, male
22.5
GTEX-S4Q7-1226-SM-4AD5I
20-29 years, male
22.5
GTEX-13FLW-2126-SM-5N9FD
50-59 years, male
22.3
GTEX-111FC-1926-SM-5GZYC
60-69 years, male
22.0
GTEX-11EQ9-1926-SM-5PNVV
30-39 years, male
22.0
GTEX-ZAB5-2426-SM-5CVMW
50-59 years, male
21.8
GTEX-131XE-0426-SM-5IJF4
50-59 years, male
21.6
GTEX-XBEC-0126-SM-4GIDT
50-59 years, male
21.4
GTEX-XLM4-1526-SM-4AT6D
60-69 years, male
21.4
GTEX-11GS4-2026-SM-5N9CP
60-69 years, male
21.2
GTEX-145MH-2326-SM-5O9AW
50-59 years, male
21.1
GTEX-OHPM-2126-SM-3LK75
50-59 years, male
21.1
GTEX-U8XE-0126-SM-4E3I3
30-39 years, male
20.9
GTEX-11NSD-1026-SM-5N9BE
20-29 years, male
20.5
GTEX-WH7G-1926-SM-4LVMM
40-49 years, male
20.3
GTEX-YEC3-1726-SM-5IFIK
50-59 years, male
20.3
GTEX-12WSH-0326-SM-5GCNH
50-59 years, male
20.0
GTEX-XBED-2026-SM-4AT5D
60-69 years, male
20.0
GTEX-11OF3-1826-SM-5987N
60-69 years, male
19.9
GTEX-T6MN-2026-SM-4DM7L
50-59 years, male
19.8
GTEX-Z93S-1726-SM-5HL8G
50-59 years, male
19.8
GTEX-SNOS-1126-SM-4DM67
40-49 years, male
19.7
GTEX-ZTSS-1526-SM-51MTC
40-49 years, male
19.4
GTEX-117XS-2026-SM-5GID1
60-69 years, male
19.2
GTEX-132QS-1226-SM-5P9GD
60-69 years, male
19.0
GTEX-139TS-1726-SM-5IJG5
60-69 years, male
19.0
GTEX-S95S-1126-SM-4B64E
60-69 years, male
19.0
GTEX-XAJ8-1326-SM-47JYT
40-49 years, male
19.0
GTEX-111YS-2026-SM-5EGGL
60-69 years, male
18.7
GTEX-13NZA-2526-SM-5IJFX
60-69 years, male
18.7
GTEX-145MO-0126-SM-5S2QU
60-69 years, male
18.7
GTEX-UPJH-0126-SM-4IHLL
50-59 years, male
18.3
GTEX-11EQ8-1426-SM-5EGJR
60-69 years, male
18.1
GTEX-12WSL-2326-SM-5DUXQ
50-59 years, male
18.1
GTEX-12ZZY-0126-SM-5LZV2
60-69 years, male
18.1
GTEX-13OW5-2526-SM-5L3I1
60-69 years, male
17.9
GTEX-13N1W-2626-SM-5IJEP
70-79 years, male
17.8
GTEX-13OVL-0426-SM-5IFG6
50-59 years, male
17.0
GTEX-11NUK-2626-SM-5A5MB
50-59 years, male
16.9
GTEX-WOFM-1126-SM-4OOSB
20-29 years, male
16.8
GTEX-WZTO-0326-SM-4PQYZ
40-49 years, male
16.7
GTEX-REY6-0126-SM-48FDT
60-69 years, male
16.6
GTEX-X5EB-2026-SM-4E3KA
40-49 years, male
16.5
GTEX-13VXU-0726-SM-5J2O7
50-59 years, male
16.4
GTEX-144GM-0426-SM-5Q5C8
20-29 years, male
16.3
GTEX-117YW-1526-SM-5EGGP
50-59 years, male
16.2
GTEX-Q2AI-1226-SM-48U14
40-49 years, male
16.2
GTEX-S7PM-0626-SM-4AD4Q
60-69 years, male
16.0
GTEX-OOBK-2126-SM-3LK5T
40-49 years, male
15.5
GTEX-QV31-1126-SM-4R1K4
30-39 years, male
15.4
GTEX-RUSQ-2126-SM-47JXK
50-59 years, male
14.6
GTEX-QEG4-0126-SM-48TZE
30-39 years, male
14.3
GTEX-13O1R-0726-SM-5IJEI
60-69 years, male
13.7
GTEX-11LCK-2326-SM-5HL53
30-39 years, male
13.6
GTEX-14ABY-0626-SM-5Q5C9
50-59 years, male
13.6
GTEX-XQ3S-2726-SM-4BOP2
20-29 years, male
13.2
GTEX-N7MS-0126-SM-3TW8O
60-69 years, male
13.0
GTEX-WK11-0326-SM-4OOS6
50-59 years, male
12.8
GTEX-Y111-2426-SM-4TT23
50-59 years, male
12.6
GTEX-11TUW-2226-SM-5EQL9
60-69 years, male
11.4
GTEX-11ZUS-2726-SM-5FQUA
30-39 years, male
11.3
GTEX-13112-0226-SM-5P9IV
50-59 years, male
10.9
GTEX-11NV4-1726-SM-5N9FC
60-69 years, male
10.2
GTEX-11WQC-2326-SM-5EQKE
60-69 years, male
9.5
GTEX-13FHP-2826-SM-5IJFW
50-59 years, male
7.5
GTEX-111VG-1926-SM-5GIDO
60-69 years, male
5.9
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.