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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 129.7
Min RPKM: 12.1
Std RPKM: 23.4
Median RPKM: 37.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
129.7
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
111.1
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
111.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
101.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
99.2
GTEX-1192X-2526-SM-59868
50-59 years, male
96.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
94.8
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
91.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
77.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
71.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
71.4
GTEX-13111-1426-SM-5DUW3
50-59 years, male
68.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
63.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
63.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
63.1
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
62.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
58.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
55.3
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
54.7
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
53.6
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
53.4
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
52.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
51.7
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
48.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
48.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
48.7
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
48.3
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
46.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
45.4
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
45.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
44.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
44.4
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
44.0
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
43.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
43.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
42.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
41.5
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
40.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
40.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
39.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
38.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
37.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
37.6
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
37.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
36.9
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
36.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
35.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
35.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
35.7
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
35.6
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
35.5
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
34.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
34.5
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
34.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
33.7
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
33.7
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
32.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
31.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
31.3
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
30.8
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
30.7
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
30.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
29.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
29.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
29.5
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
29.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
28.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
28.6
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
28.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
27.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
27.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
27.3
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
26.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
25.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
24.9
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
24.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
24.4
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
23.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
22.6
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
22.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
22.0
GTEX-1122O-1326-SM-5H11F
60-69 years, female
21.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
21.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
20.9
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
19.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
19.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
13.7
GTEX-111YS-1426-SM-5GID8
60-69 years, male
12.1
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.