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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 256.3
Min RPKM: 86.1
Std RPKM: 30.2
Median RPKM: 121.1
GTEX-ZZPU-0126-SM-5E446
50-59 years, female
256.3
GTEX-13X6H-0726-SM-5Q5BX
50-59 years, female
230.8
GTEX-ZV6S-0826-SM-5NQ6Z
40-49 years, female
230.5
GTEX-ZYFG-0726-SM-5GIDX
60-69 years, female
205.4
GTEX-T5JW-0126-SM-4DM6K
20-29 years, female
179.1
GTEX-ZP4G-0326-SM-4YCEF
20-29 years, female
176.8
GTEX-12WSN-0126-SM-5DUX5
40-49 years, male
170.0
GTEX-O5YT-0926-SM-48TDG
20-29 years, male
169.3
GTEX-U4B1-0526-SM-4DXTK
40-49 years, male
166.4
GTEX-S4Z8-0226-SM-4AD5K
60-69 years, male
165.9
GTEX-14DAR-0326-SM-5S2PS
50-59 years, male
163.0
GTEX-11LCK-0126-SM-5A5M5
30-39 years, male
162.1
GTEX-YEC4-0126-SM-4W21T
40-49 years, male
159.7
GTEX-Z9EW-0726-SM-5HL9H
40-49 years, male
157.3
GTEX-ZDTT-1026-SM-5KM19
60-69 years, male
155.5
GTEX-Y3I4-0126-SM-4TT26
50-59 years, male
155.4
GTEX-XAJ8-0126-SM-47JYG
40-49 years, male
153.9
GTEX-11P81-1326-SM-5GU5S
30-39 years, female
151.0
GTEX-12BJ1-0726-SM-5EGGF
60-69 years, male
150.7
GTEX-QLQW-0126-SM-447BK
30-39 years, male
150.1
GTEX-147F3-0126-SM-5NQBJ
50-59 years, female
148.9
GTEX-U3ZN-0126-SM-4DXUM
30-39 years, female
148.4
GTEX-XGQ4-0126-SM-4AT4H
50-59 years, male
146.0
GTEX-12WSJ-0526-SM-5GCOZ
40-49 years, female
144.5
GTEX-144GN-2126-SM-5O99D
50-59 years, male
144.4
GTEX-UJHI-0126-SM-4IHLP
50-59 years, female
143.4
GTEX-QMRM-0226-SM-4R1K7
50-59 years, male
142.5
GTEX-14E6E-1226-SM-5S2R5
30-39 years, male
142.4
GTEX-145MN-0126-SM-5RQHY
30-39 years, male
142.2
GTEX-ZVP2-0526-SM-51MSC
50-59 years, male
142.0
GTEX-QV31-0126-SM-447BP
30-39 years, male
140.0
GTEX-Y8LW-0126-SM-4VBS1
50-59 years, female
139.3
GTEX-132QS-0226-SM-5IFFZ
60-69 years, male
139.0
GTEX-Y5LM-0326-SM-4VBRN
40-49 years, female
138.9
GTEX-146FQ-0626-SM-5LU9U
30-39 years, male
136.5
GTEX-S3XE-0626-SM-4AD6B
50-59 years, male
134.9
GTEX-11XUK-0426-SM-5EQML
40-49 years, female
134.4
GTEX-XUJ4-0226-SM-4BOP8
60-69 years, female
133.9
GTEX-146FR-1926-SM-5NQA6
60-69 years, female
133.8
GTEX-R55G-0226-SM-48FEI
40-49 years, female
132.4
GTEX-WFON-0126-SM-4LVM9
40-49 years, male
132.4
GTEX-X4LF-0226-SM-4QAS8
50-59 years, male
132.3
GTEX-1399S-0226-SM-5IFFG
30-39 years, female
130.5
GTEX-X3Y1-0126-SM-4PQZA
40-49 years, male
129.8
GTEX-11NSD-0426-SM-5N9CR
20-29 years, male
128.8
GTEX-XQ8I-1726-SM-4BOQB
50-59 years, male
128.7
GTEX-P4QS-0926-SM-48TBS
60-69 years, male
127.0
GTEX-RUSQ-0126-SM-47JWV
50-59 years, male
126.7
GTEX-PLZ6-0126-SM-48TC6
30-39 years, male
126.0
GTEX-U3ZH-0126-SM-4DXUK
30-39 years, male
125.7
GTEX-1122O-0526-SM-5N9DM
60-69 years, female
123.5
GTEX-QDVN-0526-SM-48TZ4
50-59 years, male
121.2
GTEX-13FH7-1326-SM-5IFG8
50-59 years, female
121.1
GTEX-YB5E-0426-SM-5IFHR
40-49 years, male
120.5
GTEX-YFCO-0926-SM-5LUA5
40-49 years, male
119.6
GTEX-OIZH-0926-SM-48TBR
50-59 years, male
118.5
GTEX-XPVG-0626-SM-4B65B
50-59 years, male
118.5
GTEX-11EQ9-0426-SM-5A5JY
30-39 years, male
117.4
GTEX-WHWD-0126-SM-4OORS
50-59 years, male
117.2
GTEX-ZAB5-0526-SM-5CVMU
50-59 years, male
116.0
GTEX-ZLWG-0426-SM-4WWFA
50-59 years, female
116.0
GTEX-139YR-0426-SM-5IFFV
50-59 years, male
115.8
GTEX-131XG-0426-SM-5IFGD
50-59 years, female
114.4
GTEX-POMQ-0126-SM-48TD6
20-29 years, female
113.4
GTEX-13U4I-1626-SM-5IFFR
40-49 years, female
112.8
GTEX-12WSG-0926-SM-5EGIH
50-59 years, female
112.4
GTEX-139T6-0226-SM-5IFGZ
50-59 years, male
111.9
GTEX-13111-0126-SM-5EGHO
50-59 years, male
111.0
GTEX-117YX-2126-SM-5GIEL
50-59 years, male
110.8
GTEX-11VI4-0126-SM-5GU6Z
40-49 years, female
110.0
GTEX-VJYA-0126-SM-4KL1P
60-69 years, male
110.0
GTEX-Y3IK-0126-SM-4WWE9
50-59 years, female
109.9
GTEX-13PVR-0326-SM-5RQJY
60-69 years, female
109.8
GTEX-QCQG-0226-SM-48U28
50-59 years, female
109.5
GTEX-13CF3-0226-SM-5J1NW
60-69 years, female
109.2
GTEX-13N11-0126-SM-5KM2Z
50-59 years, female
109.1
GTEX-YB5K-1926-SM-4VDT4
40-49 years, female
108.4
GTEX-XMK1-0126-SM-4B65F
40-49 years, male
108.2
GTEX-ZYWO-0226-SM-5GZX3
40-49 years, female
107.6
GTEX-11DXX-0726-SM-5H12X
60-69 years, female
107.4
GTEX-13PL7-1126-SM-5MR5O
60-69 years, female
107.4
GTEX-13VXT-1326-SM-5LU3Y
20-29 years, female
107.0
GTEX-Q2AH-0226-SM-48U1I
40-49 years, male
106.7
GTEX-W5WG-0626-SM-4SOID
50-59 years, female
106.4
GTEX-1399R-0226-SM-5IJGG
30-39 years, male
105.8
GTEX-1211K-0426-SM-5FQTP
60-69 years, female
105.6
GTEX-PX3G-0926-SM-48U12
20-29 years, female
103.4
GTEX-OOBJ-0926-SM-48TDO
60-69 years, male
101.8
GTEX-XV7Q-0126-SM-4BRVK
40-49 years, female
101.5
GTEX-ZPU1-1026-SM-4YCEQ
40-49 years, male
101.3
GTEX-X585-1826-SM-4QAS3
50-59 years, male
100.3
GTEX-ZVZP-0726-SM-59HKA
50-59 years, male
100.0
GTEX-QV44-0126-SM-4R1KH
50-59 years, male
99.4
GTEX-11P7K-0426-SM-5BC5H
30-39 years, male
97.2
GTEX-P4PP-0926-SM-48TBZ
30-39 years, female
96.3
GTEX-13S86-0126-SM-5S2PI
40-49 years, male
95.3
GTEX-12WSK-0126-SM-5GCO7
40-49 years, female
94.9
GTEX-ZLFU-0526-SM-4WWBN
40-49 years, male
94.8
GTEX-XXEK-0126-SM-4BRVU
50-59 years, male
94.1
GTEX-UPK5-1626-SM-4JBHI
40-49 years, male
92.5
GTEX-PW2O-0126-SM-48TC8
20-29 years, male
90.2
GTEX-Q734-0226-SM-48U1A
40-49 years, female
89.2
GTEX-131XE-1126-SM-5EGHW
50-59 years, male
88.4
GTEX-Y114-0726-SM-4TT6U
50-59 years, female
86.1
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SPLEEN - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.