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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 5898.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 3514.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 4048.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 6469.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 4863.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 6017.1
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 5594.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 10080.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3668.6
Min RPKM: 9.7
Std RPKM: 653.6
Median RPKM: 1392.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
3668.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
3296.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
2665.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
2634.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
2617.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
2596.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
2504.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
2427.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
2422.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
2370.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
2365.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
2352.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
2345.5
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
2320.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
2290.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
2179.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
2145.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
2131.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
2131.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
2061.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
2048.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
2019.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1948.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1944.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
1915.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
1888.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
1874.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1874.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
1797.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
1788.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
1777.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
1777.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
1772.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1762.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1714.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1694.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
1683.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
1679.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
1668.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
1661.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
1634.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
1619.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
1587.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1586.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
1586.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1574.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
1557.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
1554.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1554.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
1554.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
1547.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
1500.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
1486.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
1486.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
1484.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
1475.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
1471.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
1459.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
1404.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
1392.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
1387.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
1380.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1379.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
1350.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
1345.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
1322.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
1311.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
1301.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
1290.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
1275.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
1268.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1246.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
1245.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
1239.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
1174.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
1172.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1156.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1152.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
1151.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
1135.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
1133.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
1118.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
1104.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
1067.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1063.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
1050.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
1040.4
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
1037.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
1026.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
983.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
980.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
967.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
955.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
942.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
938.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
918.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
913.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
899.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
885.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
883.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
875.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
873.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
772.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
765.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
700.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
598.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
551.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
516.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
507.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
443.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
436.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
409.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
382.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
370.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
333.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
257.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
248.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
174.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
9.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.