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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
- Antibody HPA042283
Glial cells
Not detected
Neuronal cells
High
Neuronal projections
Not detected
Synapses
Not detected
HYPOTHALAMUS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 386.1
Min RPKM: 14.0
Std RPKM: 99.3
Median RPKM: 165.2
GTEX-13N1W-0011-R8a-SM-5MR56
70-79 years, male
386.1
GTEX-13X6K-0011-R8b-SM-5PNZ4
60-69 years, female
382.2
GTEX-13NYB-0011-R8a-SM-5KM4R
40-49 years, male
379.7
GTEX-12ZZX-0011-R8a-SM-5DUW8
40-49 years, female
366.6
GTEX-11WQC-0011-R8b-SM-57WCH
60-69 years, male
355.7
GTEX-X585-0011-R8A-SM-46MUX
50-59 years, male
352.6
GTEX-13FXS-0011-R8a-SM-5J1MN
50-59 years, male
352.1
GTEX-11OF3-0011-R8b-SM-57WCS
60-69 years, male
352.0
GTEX-13OVH-0011-R8b-SM-5MR35
70-79 years, male
345.5
GTEX-13O3Q-0011-R8b-SM-5KM2J
50-59 years, male
321.0
GTEX-14ASI-0011-R8b-SM-5S2UB
60-69 years, male
315.1
GTEX-13G51-0011-R8b-SM-5LZZ4
60-69 years, male
311.3
GTEX-13OW6-0011-R8a-SM-5L3GF
50-59 years, male
310.3
GTEX-13CIG-0011-R8b-SM-5LZX5
50-59 years, male
308.1
GTEX-13RTJ-0011-R8b-SM-5O9DL
60-69 years, male
294.0
GTEX-13OW7-0011-R8b-SM-5L3HR
50-59 years, male
293.8
GTEX-QVUS-0011-R8A-SM-3GAD7
60-69 years, female
287.7
GTEX-WZTO-0011-R8A-SM-4E3II
40-49 years, male
278.6
GTEX-1399T-0011-R8b-SM-5IJD8
60-69 years, male
274.8
GTEX-12WSM-0011-R8a-SM-5DUWJ
60-69 years, male
263.7
GTEX-145LU-0011-R8b-SM-5PNZG
50-59 years, male
256.3
GTEX-WHSE-0011-R8A-SM-3P5Z1
20-29 years, male
255.4
GTEX-13OW5-0011-R8a-SM-5L3GQ
60-69 years, male
254.8
GTEX-RU72-0011-R8A-SM-2TF61
50-59 years, female
253.3
GTEX-X261-0011-R8A-SM-4E3I5
50-59 years, male
246.0
GTEX-X4XX-0011-R8B-SM-46MWM
60-69 years, male
244.8
GTEX-1313W-0011-R8a-SM-5DUVM
50-59 years, female
241.8
GTEX-13QIC-0011-R8b-SM-5O9CV
60-69 years, female
238.8
GTEX-13SLW-0011-R8b-SM-5SI64
70-79 years, male
234.3
GTEX-13NZA-0011-R8b-SM-5KM2Q
60-69 years, male
222.9
GTEX-11ONC-0011-R8b-SM-5NQ87
60-69 years, male
219.2
GTEX-13JVG-0011-R8a-SM-5KM3E
60-69 years, male
218.3
GTEX-Z93S-0011-R8a-SM-4RGNL
50-59 years, male
215.7
GTEX-R55F-0011-R8A-SM-2TF4F
50-59 years, male
211.2
GTEX-ZVZQ-0011-R8a-SM-51MR5
60-69 years, female
203.5
GTEX-NPJ8-0011-R8a-SM-2HMLG
40-49 years, male
201.5
GTEX-13IVO-0011-R8a-SM-5L3DY
70-79 years, male
199.0
GTEX-NL4W-0011-R8a-SM-2I3G4
50-59 years, male
196.8
GTEX-13CF2-0011-R8b-SM-5IJCX
60-69 years, male
192.1
GTEX-QVJO-0011-R8A-SM-447C7
60-69 years, female
190.9
GTEX-XOTO-0011-R8A-SM-4B65J
50-59 years, male
190.3
GTEX-NPJ7-0011-R8a-SM-2I3G2
60-69 years, female
176.0
GTEX-13O3O-0011-R8b-SM-5LUAL
60-69 years, female
175.0
GTEX-S7SE-0011-R8A-SM-2XCDG
50-59 years, male
174.4
GTEX-ZXG5-0011-R8a-SM-57WD1
60-69 years, male
168.9
GTEX-147F4-0011-R8b-SM-5S2UN
50-59 years, male
168.0
GTEX-131XH-0011-R8a-SM-5EGLL
50-59 years, male
167.9
GTEX-145LS-0011-R8b-SM-5PNXA
60-69 years, female
165.9
GTEX-YFC4-0011-R8a-SM-4SOK3
40-49 years, female
164.5
GTEX-T6MN-0011-R8A-SM-32QP3
50-59 years, male
163.9
GTEX-TSE9-0011-R8A-SM-3DB7R
60-69 years, female
152.9
GTEX-WVLH-0011-R8A-SM-3MJFC
50-59 years, male
147.5
GTEX-ZDXO-0011-R8a-SM-4WWD7
60-69 years, male
147.4
GTEX-144GL-0011-R8a-SM-5Q5B1
50-59 years, male
147.2
GTEX-13PDP-0011-R8b-SM-5O9CS
60-69 years, male
144.0
GTEX-11ZUS-0011-R8a-SM-5BC73
30-39 years, male
141.2
GTEX-11ZTS-0011-R8a-SM-57WDI
60-69 years, female
140.4
GTEX-13SLX-0011-R8b-SM-5PNWZ
50-59 years, female
133.0
GTEX-13FLV-0011-R8a-SM-5LZZE
50-59 years, male
131.3
GTEX-PWO3-0011-R8A-SM-2I5GD
60-69 years, female
131.1
GTEX-ZVT3-0011-R8b-SM-57WDJ
60-69 years, female
130.5
GTEX-QMR6-0011-R8A-SM-32PKJ
50-59 years, male
130.2
GTEX-13OVL-0011-R8a-SM-5L3HH
50-59 years, male
125.3
GTEX-13OW8-0011-R8a-SM-5L3G5
60-69 years, male
122.0
GTEX-132Q8-0011-R8b-SM-5DUWX
60-69 years, male
113.8
GTEX-13NZ8-0011-R8b-SM-5KM48
60-69 years, female
112.6
GTEX-145MH-0011-R8a-SM-5PNUL
50-59 years, male
111.5
GTEX-13NYS-0011-R8a-SM-5MR5H
60-69 years, male
109.5
GTEX-139TS-0011-R8a-SM-5J1NP
60-69 years, male
104.5
GTEX-13FLW-0011-R8b-SM-5J1MZ
50-59 years, male
103.2
GTEX-131XW-0011-R8a-SM-5DUWY
50-59 years, female
102.3
GTEX-Q2AG-0011-R8A-SM-2HMK5
40-49 years, female
97.7
GTEX-ZUA1-0011-R8b-SM-51MST
40-49 years, male
97.0
GTEX-13X6I-0011-R8a-SM-5PNZF
60-69 years, male
95.2
GTEX-R55E-0011-R8A-SM-2TC66
20-29 years, male
92.0
GTEX-N7MT-0011-R8a-SM-2I5GU
60-69 years, female
91.5
GTEX-P44H-0011-R8A-SM-2XCEL
40-49 years, male
90.8
GTEX-T5JC-0011-R8A-SM-32PLM
20-29 years, male
86.4
GTEX-11WQK-0011-R8a-SM-5BC7C
50-59 years, male
77.5
GTEX-YJ89-0011-R8b-SM-4SOK8
60-69 years, male
75.3
GTEX-13X6J-0011-R8b-SM-5PNUA
50-59 years, male
74.3
GTEX-ZF28-0011-R8a-SM-4WWFW
60-69 years, male
71.8
GTEX-XMD1-0011-R8A-SM-4AT48
60-69 years, male
65.0
GTEX-11GSP-0011-R8b-SM-5NQ79
60-69 years, female
58.4
GTEX-13OVJ-0011-R8b-SM-5L3FS
50-59 years, female
58.0
GTEX-ZAB4-0011-R8b-SM-4SOKF
40-49 years, male
57.8
GTEX-12WSA-0011-R8a-SM-5P9EX
60-69 years, male
53.6
GTEX-1445S-0011-R8a-SM-5PNWX
60-69 years, male
48.4
GTEX-13QJC-0011-R8b-SM-5S2U6
60-69 years, female
44.8
GTEX-11H98-0011-R8a-SM-5NQ8V
50-59 years, male
38.1
GTEX-X4XY-0011-R8A-SM-46MVC
60-69 years, male
33.3
GTEX-WWYW-0011-R8A-SM-3NB3S
50-59 years, female
29.8
GTEX-14753-0011-R8b-SM-5S2U1
60-69 years, male
26.4
GTEX-RVPU-0011-R8A-SM-5SI8I
50-59 years, male
16.0
GTEX-N7MS-0011-R8a-SM-2YUMK
60-69 years, male
14.2
GTEX-NL3H-0011-R8a-SM-5S2VF
60-69 years, male
14.0
Show all
HYPOTHALAMUS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.