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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 139.1
Min RPKM: 32.9
Std RPKM: 26.2
Median RPKM: 80.3
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
139.1
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
135.3
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
134.0
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
133.1
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
118.8
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
115.5
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
115.4
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
114.6
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
109.1
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
108.4
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
106.5
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
105.5
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
100.3
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
99.3
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
97.4
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
95.1
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
93.9
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
92.8
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
90.9
GTEX-13O21-1926-SM-5MR39
50-59 years, male
90.9
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
90.1
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
89.2
GTEX-X261-2426-SM-4PQZU
50-59 years, male
86.0
GTEX-11P82-0926-SM-5986X
20-29 years, male
85.9
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
84.5
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
82.5
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
82.1
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
81.3
GTEX-13113-1526-SM-5EGHV
60-69 years, female
80.3
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
80.3
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
77.4
GTEX-1445S-2926-SM-5O993
60-69 years, male
72.5
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
72.2
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
72.2
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
70.6
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
69.3
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
67.2
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
67.1
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
64.7
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
64.0
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
62.4
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
61.9
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
61.6
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
61.4
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
60.3
GTEX-Y111-2626-SM-4TT24
50-59 years, male
59.3
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
57.6
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
57.5
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
51.8
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
49.3
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
48.0
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
44.6
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
43.8
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
43.7
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
38.9
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
37.3
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
32.9
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.