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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 480.1
Min RPKM: 143.7
Std RPKM: 72.6
Median RPKM: 278.8
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
480.1
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
473.6
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
454.4
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
442.8
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
439.5
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
412.1
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
410.3
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
401.4
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
401.1
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
400.7
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
389.7
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
380.7
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
376.5
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
362.6
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
355.5
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
353.2
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
352.4
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
349.9
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
348.3
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
340.9
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
338.8
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
332.8
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
332.6
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
332.5
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
331.8
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
328.7
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
324.6
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
314.9
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
311.3
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
310.9
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
309.5
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
307.9
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
305.4
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
305.2
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
304.4
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
303.5
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
302.4
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
296.4
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
294.4
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
286.6
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
284.4
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
283.5
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
283.5
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
281.6
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
280.1
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
279.7
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
279.2
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
278.9
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
278.7
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
277.8
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
275.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
271.2
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
259.7
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
257.9
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
256.9
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
255.5
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
254.7
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
254.1
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
253.5
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
252.0
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
251.9
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
250.3
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
248.2
GTEX-11I78-2026-SM-5987C
50-59 years, female
245.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
245.2
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
243.6
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
242.3
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
241.1
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
239.5
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
238.8
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
237.5
GTEX-S341-1226-SM-4AD5S
40-49 years, female
237.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
237.3
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
236.7
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
236.5
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
235.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
235.3
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
235.0
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
225.1
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
222.5
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
220.0
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
218.2
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
218.2
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
215.5
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
204.9
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
198.4
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
195.7
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
188.4
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
187.7
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
187.5
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
181.5
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
178.7
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
177.4
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
176.0
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
148.2
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
143.7
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.