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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 398.6
Min RPKM: 93.6
Std RPKM: 60.9
Median RPKM: 172.8
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
398.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
365.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
320.0
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
297.9
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
297.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
286.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
284.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
277.8
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
276.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
269.7
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
263.5
GTEX-1192X-2526-SM-59868
50-59 years, male
262.6
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
261.5
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
251.3
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
246.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
245.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
243.4
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
239.8
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
239.6
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
227.8
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
225.3
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
224.7
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
217.8
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
217.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
216.7
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
214.7
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
214.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
213.6
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
211.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
210.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
208.8
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
206.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
203.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
202.1
GTEX-117YX-0326-SM-5GICL
50-59 years, male
200.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
189.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
188.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
187.9
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
186.0
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
182.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
177.0
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
175.9
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
174.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
173.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
172.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
168.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
168.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
168.5
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
166.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
165.7
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
164.6
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
163.1
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
163.0
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
161.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
158.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
158.4
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
157.0
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
156.2
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
155.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
151.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
151.4
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
151.3
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
148.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
147.9
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
147.3
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
147.1
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
146.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
144.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
144.1
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
143.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
142.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
142.2
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
133.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
132.8
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
131.7
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
127.3
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
126.9
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
124.1
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
121.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
116.7
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
116.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
111.3
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
110.3
GTEX-1122O-1326-SM-5H11F
60-69 years, female
106.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
96.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
96.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
94.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
93.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.