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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 10623.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 2976.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 4597.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 6516.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 4890.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 8534.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 5628.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 4921.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 4376.2
Min RPKM: 375.5
Std RPKM: 787.8
Median RPKM: 1558.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
4376.2
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
3622.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
3578.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
3527.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
3096.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
3035.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
2967.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
2955.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
2952.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
2916.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
2869.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
2828.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
2750.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
2745.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
2741.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
2732.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
2720.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
2703.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
2687.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
2685.1
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
2626.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
2605.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
2580.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
2566.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
2507.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
2431.0
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
2412.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
2387.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
2372.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
2330.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
2316.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
2283.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
2236.1
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
2229.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
2220.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
2157.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
2122.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
2076.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
1970.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
1954.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1923.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
1907.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
1879.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
1876.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
1872.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
1870.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
1839.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1800.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
1793.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
1782.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
1773.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
1745.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1702.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
1685.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
1682.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
1662.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1627.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1616.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
1595.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1558.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
1540.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
1528.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1515.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1479.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
1449.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
1423.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
1403.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1382.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
1382.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
1355.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1355.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
1338.7
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
1327.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
1291.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
1284.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
1273.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
1266.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
1248.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1242.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
1224.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
1222.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
1212.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1201.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
1196.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1180.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
1154.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
1138.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1134.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
1134.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1126.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
1098.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
1059.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1055.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1053.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
1029.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
1018.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1008.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
962.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
961.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
936.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
927.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
921.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
914.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
909.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
908.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
905.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
896.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
893.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
848.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
835.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
832.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
805.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
801.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
756.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
699.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
600.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
506.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
464.9
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
375.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.