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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 3312.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 256.1
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 259.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 905.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 598.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 2292.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 902.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1354.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 5574.7
Min RPKM: 269.3
Std RPKM: 741.9
Median RPKM: 1639.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
5574.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
3985.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
3960.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
3157.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
3068.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
3012.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
2934.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
2806.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
2752.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
2746.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
2662.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
2650.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
2638.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
2580.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
2538.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
2449.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
2445.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
2405.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
2395.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
2365.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
2359.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
2345.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
2259.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
2194.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
2150.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
2141.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
2120.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
2119.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
2112.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
2106.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
2105.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1989.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1966.5
GTEX-YECK-1926-SM-4W21H
60-69 years, male
1900.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
1899.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
1884.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
1874.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1860.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
1827.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
1812.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
1796.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
1787.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1782.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
1782.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1780.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1776.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
1771.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
1745.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
1741.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
1740.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
1738.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
1732.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1730.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
1724.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
1711.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
1688.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
1688.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1660.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
1649.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
1639.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1624.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
1603.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
1595.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
1592.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1588.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
1587.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
1562.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
1561.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
1559.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
1527.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
1516.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
1510.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
1443.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
1434.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
1429.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
1427.4
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
1426.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
1414.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1373.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
1363.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
1324.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1323.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
1315.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
1293.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
1289.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
1279.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
1258.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
1232.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
1229.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
1225.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1219.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
1205.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
1198.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
1196.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1187.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
1145.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
1087.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
1076.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
1074.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
1070.0
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1063.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
1055.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
1023.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
1002.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
978.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
973.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
968.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
951.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
908.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
878.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
864.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
849.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
840.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
831.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
802.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
742.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
682.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
669.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
269.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.