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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 261.8
Min RPKM: 51.6
Std RPKM: 39.1
Median RPKM: 165.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
261.8
GTEX-13O61-1326-SM-5KM31
60-69 years, male
235.5
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
231.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
228.4
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
221.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
215.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
213.3
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
212.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
204.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
204.2
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
204.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
204.0
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
203.9
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
203.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
202.4
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
200.9
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
200.6
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
199.1
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
193.2
GTEX-ZTSS-0926-SM-59865
40-49 years, male
192.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
192.0
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
191.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
188.9
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
188.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
184.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
183.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
181.4
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
181.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
179.1
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
179.0
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
178.2
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
177.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
173.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
173.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
172.6
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
170.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
169.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
169.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
168.6
GTEX-13113-1226-SM-5EGHT
60-69 years, female
168.5
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
167.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
167.2
GTEX-111YS-1426-SM-5GID8
60-69 years, male
166.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
166.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
165.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
165.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
162.6
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
161.8
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
161.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
160.2
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
160.0
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
158.4
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
156.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
156.5
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
155.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
155.8
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
155.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
151.8
GTEX-1122O-1326-SM-5H11F
60-69 years, female
147.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
146.9
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
143.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
141.3
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
140.5
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
139.3
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
136.5
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
134.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
132.6
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
129.6
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
126.8
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
126.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
124.7
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
124.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
123.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
117.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
117.0
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
116.9
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
116.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
116.3
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
111.7
GTEX-13111-1426-SM-5DUW3
50-59 years, male
109.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
108.7
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
108.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
106.7
GTEX-1192X-2526-SM-59868
50-59 years, male
97.7
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
95.7
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
95.4
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
55.9
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
51.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.