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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 235.5
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 43.1
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 70.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 158
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 144.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 282.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 117
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 176.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 265.9
Min RPKM: 28.4
Std RPKM: 52.6
Median RPKM: 128.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
265.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
265.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
264.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
255.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
251.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
241.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
236.1
GTEX-RN64-1826-SM-48FDV
50-59 years, male
233.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
224.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
224.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
222.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
215.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
210.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
209.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
208.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
202.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
195.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
193.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
191.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
191.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
190.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
188.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
187.2
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
182.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
179.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
179.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
175.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
174.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
173.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
172.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
171.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
169.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
168.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
165.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
164.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
161.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
161.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
161.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
160.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
160.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
158.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
156.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
156.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
155.3
GTEX-13113-1326-SM-5GCOI
60-69 years, female
155.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
152.4
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
150.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
150.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
143.7
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
142.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
142.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
140.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
140.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
135.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
135.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
132.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
132.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
130.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
128.9
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
128.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
127.9
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
127.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
127.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
126.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
125.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
125.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
122.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
121.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
121.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
121.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
121.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
119.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
116.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
115.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
114.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
114.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
114.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
113.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
112.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
111.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
110.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
110.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
110.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
107.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
107.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
105.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
105.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
102.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
101.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
101.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
100.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
100.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
99.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
99.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
98.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
98.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
95.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
95.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
94.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
90.9
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
88.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
87.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
86.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
86.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
82.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
81.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
80.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
69.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
67.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
66.0
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
64.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
60.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
60.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
55.8
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
52.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
49.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
47.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
45.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
28.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.