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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 232.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 211.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 165.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 327.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 467.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 179.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 221.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 284.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2062.6
Min RPKM: 18.6
Std RPKM: 435.6
Median RPKM: 396.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
2062.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1994.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1775.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
1615.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
1544.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
1498.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
1393.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
1370.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
1342.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
1276.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
1237.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1216.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
1132.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
1010.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
981.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
971.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
964.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
891.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
882.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
865.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
861.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
853.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
848.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
819.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
766.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
714.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
708.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
699.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
697.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
682.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
662.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
655.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
652.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
646.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
639.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
625.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
614.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
599.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
581.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
576.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
575.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
567.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
556.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
546.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
532.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
524.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
513.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
502.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
501.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
498.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
477.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
465.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
454.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
449.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
434.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
432.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
420.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
410.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
401.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
396.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
391.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
383.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
377.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
375.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
374.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
373.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
368.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
366.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
361.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
360.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
335.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
332.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
330.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
315.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
312.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
305.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
301.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
300.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
297.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
275.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
261.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
261.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
255.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
244.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
242.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
238.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
229.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
226.7
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
183.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
180.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
129.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
124.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
123.5
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
117.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
110.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
109.5
GTEX-YECK-1926-SM-4W21H
60-69 years, male
107.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
103.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
99.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
99.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
96.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
91.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
82.9
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
82.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
82.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
80.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
79.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
76.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
69.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
67.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
66.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
65.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
62.0
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
59.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
57.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
53.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
49.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
48.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
18.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.