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COLON - Expression summary
RNA expressioni
HPA:66.2TPM
GTEx:13.9RPKM
FANTOM5:38.3Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 66.2
overview Male, age 54 Sample 1
TPM: 62.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 83.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 96.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 70
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 49.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 56.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 87.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 61.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 38.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 83.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 73.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 53.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 44.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 13.9
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 0.3
Samples: 149

Max RPKM: 8.1
Min RPKM: 0.0
Std RPKM: 1.2
Median RPKM: 0.0
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 8.1
GTEX-XBED-1726-SM-47JYO 60-69 years, male 7.5
GTEX-V955-1726-SM-4JBHF 60-69 years, male 6.4
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 6.1
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 3.8
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 3.6
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 2.2
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 1.9
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 1.5
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 1.2
Show all
Colon - Transverse
RPKM: 24.2
Samples: 196

Max RPKM: 73.8
Min RPKM: 0.0
Std RPKM: 18.7
Median RPKM: 28.3
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 73.8
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 58.7
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 58.1
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 58.0
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 57.2
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 54.3
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 51.4
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 50.7
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 50.5
GTEX-QV31-0826-SM-4R1KR 30-39 years, male 50.1
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 38.3
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 33.3
FF:10014-101C5 62,83,84 years, mixed 38.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.