We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
- Antibody HPA055177
Glial cells
Not detected
Neuronal cells
High
Neuronal projections
High
Synapses
Not detected
Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
- Antibody HPA072505
Glial cells
Not detected
Neuronal cells
High
Neuronal projections
High
Synapses
Not detected
HYPOTHALAMUS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 447.9
Min RPKM: 1.5
Std RPKM: 84.6
Median RPKM: 47.5
GTEX-X261-0011-R8A-SM-4E3I5
50-59 years, male
447.9
GTEX-13JVG-0011-R8a-SM-5KM3E
60-69 years, male
397.3
GTEX-13X6K-0011-R8b-SM-5PNZ4
60-69 years, female
351.7
GTEX-NPJ8-0011-R8a-SM-2HMLG
40-49 years, male
309.4
GTEX-NL4W-0011-R8a-SM-2I3G4
50-59 years, male
290.7
GTEX-QVUS-0011-R8A-SM-3GAD7
60-69 years, female
290.6
GTEX-13IVO-0011-R8a-SM-5L3DY
70-79 years, male
209.1
GTEX-13OVH-0011-R8b-SM-5MR35
70-79 years, male
169.0
GTEX-13PDP-0011-R8b-SM-5O9CS
60-69 years, male
169.0
GTEX-13QIC-0011-R8b-SM-5O9CV
60-69 years, female
152.1
GTEX-ZXG5-0011-R8a-SM-57WD1
60-69 years, male
150.2
GTEX-13CIG-0011-R8b-SM-5LZX5
50-59 years, male
138.2
GTEX-R55F-0011-R8A-SM-2TF4F
50-59 years, male
137.8
GTEX-13OW6-0011-R8a-SM-5L3GF
50-59 years, male
133.0
GTEX-11WQC-0011-R8b-SM-57WCH
60-69 years, male
127.2
GTEX-X4XX-0011-R8B-SM-46MWM
60-69 years, male
125.7
GTEX-13RTJ-0011-R8b-SM-5O9DL
60-69 years, male
111.0
GTEX-13G51-0011-R8b-SM-5LZZ4
60-69 years, male
108.3
GTEX-11OF3-0011-R8b-SM-57WCS
60-69 years, male
106.9
GTEX-13O3Q-0011-R8b-SM-5KM2J
50-59 years, male
104.1
GTEX-14ASI-0011-R8b-SM-5S2UB
60-69 years, male
104.0
GTEX-1399T-0011-R8b-SM-5IJD8
60-69 years, male
102.0
GTEX-WHSE-0011-R8A-SM-3P5Z1
20-29 years, male
98.9
GTEX-13O3O-0011-R8b-SM-5LUAL
60-69 years, female
98.0
GTEX-X585-0011-R8A-SM-46MUX
50-59 years, male
94.6
GTEX-13N1W-0011-R8a-SM-5MR56
70-79 years, male
92.7
GTEX-13NYB-0011-R8a-SM-5KM4R
40-49 years, male
91.9
GTEX-12ZZX-0011-R8a-SM-5DUW8
40-49 years, female
90.5
GTEX-13NZA-0011-R8b-SM-5KM2Q
60-69 years, male
88.8
GTEX-13FXS-0011-R8a-SM-5J1MN
50-59 years, male
83.8
GTEX-145LU-0011-R8b-SM-5PNZG
50-59 years, male
78.2
GTEX-13OW7-0011-R8b-SM-5L3HR
50-59 years, male
76.5
GTEX-13SLW-0011-R8b-SM-5SI64
70-79 years, male
72.6
GTEX-PWO3-0011-R8A-SM-2I5GD
60-69 years, female
71.4
GTEX-11ONC-0011-R8b-SM-5NQ87
60-69 years, male
69.4
GTEX-RU72-0011-R8A-SM-2TF61
50-59 years, female
59.6
GTEX-WZTO-0011-R8A-SM-4E3II
40-49 years, male
58.8
GTEX-Z93S-0011-R8a-SM-4RGNL
50-59 years, male
56.1
GTEX-XOTO-0011-R8A-SM-4B65J
50-59 years, male
55.9
GTEX-S7SE-0011-R8A-SM-2XCDG
50-59 years, male
55.6
GTEX-12WSM-0011-R8a-SM-5DUWJ
60-69 years, male
54.9
GTEX-13NYS-0011-R8a-SM-5MR5H
60-69 years, male
53.3
GTEX-T5JC-0011-R8A-SM-32PLM
20-29 years, male
52.8
GTEX-13OW8-0011-R8a-SM-5L3G5
60-69 years, male
52.6
GTEX-13SLX-0011-R8b-SM-5PNWZ
50-59 years, female
52.3
GTEX-13NZ8-0011-R8b-SM-5KM48
60-69 years, female
49.9
GTEX-11ZUS-0011-R8a-SM-5BC73
30-39 years, male
49.7
GTEX-1313W-0011-R8a-SM-5DUVM
50-59 years, female
49.5
GTEX-11WQK-0011-R8a-SM-5BC7C
50-59 years, male
45.5
GTEX-13OW5-0011-R8a-SM-5L3GQ
60-69 years, male
44.1
GTEX-ZVZQ-0011-R8a-SM-51MR5
60-69 years, female
43.8
GTEX-13CF2-0011-R8b-SM-5IJCX
60-69 years, male
41.3
GTEX-131XH-0011-R8a-SM-5EGLL
50-59 years, male
37.6
GTEX-1445S-0011-R8a-SM-5PNWX
60-69 years, male
35.2
GTEX-QMR6-0011-R8A-SM-32PKJ
50-59 years, male
34.2
GTEX-13FLV-0011-R8a-SM-5LZZE
50-59 years, male
32.9
GTEX-T6MN-0011-R8A-SM-32QP3
50-59 years, male
30.5
GTEX-NPJ7-0011-R8a-SM-2I3G2
60-69 years, female
30.3
GTEX-ZDXO-0011-R8a-SM-4WWD7
60-69 years, male
29.4
GTEX-145LS-0011-R8b-SM-5PNXA
60-69 years, female
28.4
GTEX-131XW-0011-R8a-SM-5DUWY
50-59 years, female
28.2
GTEX-132Q8-0011-R8b-SM-5DUWX
60-69 years, male
27.9
GTEX-Q2AG-0011-R8A-SM-2HMK5
40-49 years, female
27.8
GTEX-ZUA1-0011-R8b-SM-51MST
40-49 years, male
26.9
GTEX-13OVL-0011-R8a-SM-5L3HH
50-59 years, male
26.5
GTEX-144GL-0011-R8a-SM-5Q5B1
50-59 years, male
26.3
GTEX-13FLW-0011-R8b-SM-5J1MZ
50-59 years, male
25.5
GTEX-13OVJ-0011-R8b-SM-5L3FS
50-59 years, female
24.7
GTEX-13X6J-0011-R8b-SM-5PNUA
50-59 years, male
24.5
GTEX-TSE9-0011-R8A-SM-3DB7R
60-69 years, female
23.5
GTEX-11ZTS-0011-R8a-SM-57WDI
60-69 years, female
22.9
GTEX-11GSP-0011-R8b-SM-5NQ79
60-69 years, female
22.6
GTEX-ZVT3-0011-R8b-SM-57WDJ
60-69 years, female
22.2
GTEX-ZAB4-0011-R8b-SM-4SOKF
40-49 years, male
20.8
GTEX-145MH-0011-R8a-SM-5PNUL
50-59 years, male
18.9
GTEX-ZF28-0011-R8a-SM-4WWFW
60-69 years, male
18.7
GTEX-N7MT-0011-R8a-SM-2I5GU
60-69 years, female
18.4
GTEX-YJ89-0011-R8b-SM-4SOK8
60-69 years, male
18.4
GTEX-YFC4-0011-R8a-SM-4SOK3
40-49 years, female
18.0
GTEX-147F4-0011-R8b-SM-5S2UN
50-59 years, male
17.8
GTEX-X4XY-0011-R8A-SM-46MVC
60-69 years, male
17.7
GTEX-13X6I-0011-R8a-SM-5PNZF
60-69 years, male
17.6
GTEX-139TS-0011-R8a-SM-5J1NP
60-69 years, male
17.5
GTEX-P44H-0011-R8A-SM-2XCEL
40-49 years, male
15.4
GTEX-11H98-0011-R8a-SM-5NQ8V
50-59 years, male
12.9
GTEX-XMD1-0011-R8A-SM-4AT48
60-69 years, male
11.6
GTEX-13QJC-0011-R8b-SM-5S2U6
60-69 years, female
10.2
GTEX-WVLH-0011-R8A-SM-3MJFC
50-59 years, male
10.2
GTEX-R55E-0011-R8A-SM-2TC66
20-29 years, male
9.2
GTEX-QVJO-0011-R8A-SM-447C7
60-69 years, female
7.9
GTEX-14753-0011-R8b-SM-5S2U1
60-69 years, male
6.7
GTEX-N7MS-0011-R8a-SM-2YUMK
60-69 years, male
5.7
GTEX-WWYW-0011-R8A-SM-3NB3S
50-59 years, female
5.2
GTEX-12WSA-0011-R8a-SM-5P9EX
60-69 years, male
2.5
GTEX-RVPU-0011-R8A-SM-5SI8I
50-59 years, male
2.0
GTEX-NL3H-0011-R8a-SM-5S2VF
60-69 years, male
1.5
Show all
HYPOTHALAMUS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.