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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 166.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 35.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 40.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 97.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 86.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 195.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 102.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 267.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 353.4
Min RPKM: 23.0
Std RPKM: 44.1
Median RPKM: 115.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
353.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
233.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
214.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
196.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
195.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
187.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
185.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
177.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
174.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
169.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
168.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
165.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
161.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
161.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
161.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
160.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
159.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
159.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
149.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
148.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
148.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
147.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
146.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
145.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
145.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
144.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
142.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
140.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
139.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
138.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
137.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
135.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
135.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
133.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
132.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
131.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
131.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
131.2
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
129.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
129.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
128.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
127.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
127.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
126.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
126.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
125.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
125.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
125.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
124.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
122.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
121.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
121.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
121.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
121.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
120.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
119.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
117.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
116.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
116.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
115.0
GTEX-13113-1326-SM-5GCOI
60-69 years, female
113.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
112.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
112.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
109.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
108.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
108.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
108.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
107.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
105.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
104.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
104.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
104.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
101.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
101.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
101.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
100.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
99.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
98.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
98.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
96.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
95.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
95.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
95.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
94.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
94.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
93.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
93.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
92.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
91.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
88.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
87.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
87.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
86.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
85.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
84.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
84.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
83.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
83.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
82.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
80.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
79.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
79.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
79.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
71.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
69.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
68.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
67.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
66.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
65.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
60.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
59.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
58.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
56.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
53.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
53.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
37.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
28.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
23.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
23.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.