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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1217.8
Min RPKM: 83.3
Std RPKM: 223.0
Median RPKM: 351.4
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
1217.8
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
1067.4
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
956.1
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
934.5
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
849.1
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
771.6
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
770.2
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
744.8
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
734.4
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
707.9
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
690.8
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
678.4
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
652.9
GTEX-S341-1226-SM-4AD5S
40-49 years, female
638.4
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
635.9
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
633.2
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
615.5
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
593.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
577.0
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
564.6
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
554.1
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
529.1
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
512.4
GTEX-11I78-2026-SM-5987C
50-59 years, female
502.4
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
497.3
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
488.2
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
471.1
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
459.0
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
453.7
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
449.9
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
435.3
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
435.0
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
430.6
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
421.5
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
419.0
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
413.5
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
405.2
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
402.9
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
401.9
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
397.1
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
387.0
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
385.7
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
383.3
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
376.9
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
370.1
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
360.4
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
353.9
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
352.8
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
350.0
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
343.2
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
330.2
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
328.7
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
324.2
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
316.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
313.9
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
311.9
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
311.0
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
296.4
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
283.6
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
275.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
269.8
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
260.0
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
253.0
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
246.7
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
243.7
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
240.0
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
238.2
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
237.2
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
230.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
229.7
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
229.4
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
229.3
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
219.5
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
210.6
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
210.1
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
200.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
200.6
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
197.9
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
197.3
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
192.5
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
192.5
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
188.9
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
187.8
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
186.0
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
185.4
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
182.7
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
182.4
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
175.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
169.2
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
162.9
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
154.5
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
152.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
143.5
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
132.1
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
111.8
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
83.3
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.