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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 533.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 285.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 283.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 383.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 323.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 560.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 366.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 644.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 718.3
Min RPKM: 86.5
Std RPKM: 136.6
Median RPKM: 359.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
718.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
698.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
672.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
659.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
629.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
595.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
590.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
589.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
588.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
582.6
GTEX-R53T-0326-SM-48FEC
50-59 years, female
562.8
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
549.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
530.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
526.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
514.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
500.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
493.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
492.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
489.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
488.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
481.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
469.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
469.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
457.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
451.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
443.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
442.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
442.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
441.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
438.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
438.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
436.6
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
435.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
432.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
417.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
416.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
414.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
411.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
410.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
409.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
408.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
407.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
404.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
403.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
402.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
401.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
399.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
398.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
397.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
392.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
388.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
384.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
382.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
378.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
376.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
374.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
363.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
362.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
361.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
359.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
358.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
358.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
358.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
356.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
356.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
344.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
341.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
335.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
328.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
326.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
316.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
307.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
305.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
305.0
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
303.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
302.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
301.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
291.7
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
288.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
283.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
273.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
272.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
271.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
270.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
266.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
264.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
259.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
251.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
249.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
245.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
240.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
237.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
236.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
235.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
234.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
227.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
226.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
226.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
226.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
223.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
205.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
199.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
199.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
194.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
194.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
192.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
190.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
182.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
177.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
175.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
173.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
167.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
153.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
134.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
131.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
128.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
122.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
89.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
86.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.