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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 73.2
Min RPKM: 1.9
Std RPKM: 13.8
Median RPKM: 14.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
73.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
50.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
50.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
47.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
45.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
41.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
40.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
38.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
37.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
37.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
36.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
35.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
35.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
34.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
34.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
30.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
30.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
29.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
29.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
28.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
28.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
28.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
27.3
GTEX-RNOR-0011-R1A-SM-5SI8F
50-59 years, female
26.8
GTEX-XOTO-0011-R1B-SM-4B65C
50-59 years, male
26.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
25.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
24.4
GTEX-N7MT-0011-R1a-SM-5SI7S
60-69 years, female
23.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
23.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
22.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
21.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
21.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
21.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
21.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
20.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
20.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
20.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
19.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
18.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
18.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
18.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
17.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
17.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
15.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
14.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
14.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
14.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
14.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
13.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
13.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
13.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
12.8
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
12.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
12.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
12.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
11.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
10.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
10.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
9.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
9.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
9.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
9.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
9.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
8.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
8.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
7.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
6.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
6.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
6.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
6.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
6.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
6.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
6.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
6.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
5.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
5.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
5.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
4.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
4.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
4.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
4.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
4.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
4.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
4.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
4.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
4.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
3.7
GTEX-12WSB-0011-R1b-SM-5P9EY
60-69 years, female
3.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
3.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
3.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
2.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
2.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
2.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
1.9
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HIPPOCAMPUS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.