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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 2985.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 2261.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1538
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 2485
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 2808.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1206.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 2321
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 3171
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3344.3
Min RPKM: 150.0
Std RPKM: 745.4
Median RPKM: 913.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
3344.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
3227.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
3047.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
2801.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
2699.5
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
2615.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
2542.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
2516.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
2504.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
2487.1
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
2440.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
2343.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
2318.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
2307.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
2298.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
2288.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
2140.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
2133.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
2084.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
2073.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
2048.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
2036.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
2032.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
2005.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1970.0
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
1905.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
1895.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
1752.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
1718.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
1660.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
1623.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
1597.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
1542.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1519.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
1510.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
1481.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1344.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
1290.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1192.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1187.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1132.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1109.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
1105.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
1082.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
1067.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1058.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
1029.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
1023.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
997.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
981.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
979.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
968.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
952.8
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
946.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
941.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
939.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
933.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
931.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
929.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
913.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
884.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
883.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
879.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
875.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
869.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
826.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
824.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
819.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
784.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
775.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
767.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
747.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
735.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
721.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
719.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
717.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
701.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
694.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
693.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
689.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
687.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
675.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
673.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
655.5
GTEX-REY6-1226-SM-48FDR
60-69 years, male
648.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
637.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
633.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
626.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
622.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
617.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
608.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
606.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
604.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
601.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
581.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
561.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
553.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
552.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
551.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
536.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
534.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
534.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
531.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
493.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
487.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
471.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
449.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
439.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
424.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
408.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
404.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
403.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
387.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
383.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
382.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
317.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
293.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
280.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
150.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.