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COLON - Expression summary
RNA expressioni
HPA:142.6TPM
GTEx:150.7RPKM
FANTOM5:672.8Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 142.6
overview Male, age 54 Sample 1
TPM: 296.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 174.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 193.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 371.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 72.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 77.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 54.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 74.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 68.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 114.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 93.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 118.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 141.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 150.7
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 136.4
Samples: 149

Max RPKM: 418.4
Min RPKM: 40.6
Std RPKM: 64.0
Median RPKM: 118.9
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 418.4
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 384.0
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 303.5
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 296.2
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 259.7
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 257.8
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 255.9
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 245.6
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 244.1
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 242.4
Show all
Colon - Transverse
RPKM: 161.6
Samples: 196

Max RPKM: 359.6
Min RPKM: 34.1
Std RPKM: 57.8
Median RPKM: 163.6
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 359.6
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 332.1
GTEX-R55G-1226-SM-48FDC 40-49 years, female 299.7
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 299.6
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 290.7
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 287.4
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 283.7
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 265.9
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 260.5
GTEX-XQ8I-2126-SM-4BOOM 50-59 years, male 259.9
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 672.8
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 742.7
FF:10014-101C5 62,83,84 years, mixed 672.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.