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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 529.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 962.3
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 453.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1306.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 813.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1751.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 2605.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1716.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3530.4
Min RPKM: 12.2
Std RPKM: 739.8
Median RPKM: 719.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
3530.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
3361.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
3326.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
3065.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
3035.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
2429.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
2133.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
2087.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
2019.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
2018.5
GTEX-RU72-1426-SM-46MUF
50-59 years, female
1977.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1967.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1935.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
1900.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
1847.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
1796.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
1756.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
1666.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
1510.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
1430.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1420.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1368.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
1350.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
1338.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
1322.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1302.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1295.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1290.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
1258.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
1199.9
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
1151.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1143.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1115.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
1100.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
1100.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
1086.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
1069.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
1053.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
1049.3
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
1021.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
1006.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
984.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
971.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
939.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
900.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
899.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
877.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
867.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
865.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
860.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
809.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
794.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
760.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
759.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
741.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
734.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
729.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
728.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
723.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
719.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
704.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
703.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
702.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
670.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
659.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
650.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
636.1
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
628.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
601.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
601.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
581.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
563.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
549.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
540.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
537.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
526.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
525.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
501.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
498.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
492.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
484.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
449.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
446.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
443.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
442.9
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
440.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
439.1
GTEX-Q734-0326-SM-48U15
40-49 years, female
418.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
412.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
401.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
373.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
345.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
344.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
335.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
324.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
297.3
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
295.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
285.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
285.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
269.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
253.0
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
202.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
199.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
197.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
194.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
189.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
188.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
181.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
150.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
136.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
135.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
95.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
87.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
81.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
66.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
52.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
46.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
44.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
12.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
