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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 459.1
Min RPKM: 157.3
Std RPKM: 50.6
Median RPKM: 242.3
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
459.1
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
416.6
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
382.3
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
354.8
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
334.1
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
324.3
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
317.4
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
309.2
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
306.6
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
305.2
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
305.1
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
296.6
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
295.0
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
293.9
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
292.7
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
287.4
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
281.4
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
278.8
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
276.1
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
274.4
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
273.7
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
270.9
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
269.3
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
267.7
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
267.3
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
266.1
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
265.9
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
264.8
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
264.6
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
264.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
263.2
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
259.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
259.0
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
258.0
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
257.8
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
256.9
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
254.0
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
253.3
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
251.3
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
247.2
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
247.1
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
246.4
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
246.0
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
245.8
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
244.1
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
243.4
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
243.1
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
242.3
GTEX-QCQG-1226-SM-48U23
50-59 years, female
242.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
241.6
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
240.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
238.9
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
236.3
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
233.7
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
232.3
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
229.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
228.7
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
228.1
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
228.0
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
227.5
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
227.2
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
225.4
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
222.8
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
221.8
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
221.5
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
221.3
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
219.7
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
219.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
219.1
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
217.6
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
217.3
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
216.4
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
213.5
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
213.5
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
213.3
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
210.3
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
209.9
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
209.5
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
208.7
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
206.6
GTEX-11I78-2026-SM-5987C
50-59 years, female
203.0
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
203.0
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
202.4
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
201.9
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
198.8
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
197.4
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
196.7
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
193.8
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
185.1
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
177.7
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
169.4
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
169.2
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
163.5
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
161.2
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
157.7
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
157.3
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.