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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 455.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 396.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 154.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 88
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 288.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 154.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 502.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 128.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2139.7
Min RPKM: 17.9
Std RPKM: 379.6
Median RPKM: 415.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
2139.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1677.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
1561.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1553.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
1537.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
1377.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1353.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1155.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
1100.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
1066.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1025.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
904.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
893.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
882.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
875.4
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
865.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
864.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
861.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
848.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
823.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
806.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
778.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
754.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
753.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
750.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
749.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
733.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
726.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
724.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
708.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
694.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
665.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
624.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
600.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
588.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
574.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
561.1
GTEX-RN64-1826-SM-48FDV
50-59 years, male
550.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
547.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
544.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
544.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
539.5
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
530.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
525.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
525.1
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
520.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
519.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
517.0
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
504.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
499.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
495.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
494.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
491.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
479.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
471.5
GTEX-REY6-1226-SM-48FDR
60-69 years, male
469.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
451.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
448.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
443.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
415.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
406.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
397.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
381.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
370.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
361.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
360.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
354.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
351.5
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
350.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
347.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
344.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
320.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
318.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
318.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
316.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
316.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
314.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
312.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
292.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
288.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
286.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
283.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
282.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
282.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
277.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
276.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
275.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
260.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
255.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
251.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
250.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
243.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
233.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
213.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
207.6
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
199.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
197.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
190.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
190.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
183.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
180.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
177.6
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
169.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
151.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
147.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
142.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
132.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
123.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
122.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
108.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
106.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
104.6
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
99.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
64.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
55.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
53.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
22.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
20.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
17.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.