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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 33418.4
Min RPKM: 54.6
Std RPKM: 5321.1
Median RPKM: 6131.4
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
33418.4
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
17007.6
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
15266.3
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
14250.3
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
14052.8
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
13704.4
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
13699.9
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
13462.5
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
11421.2
GTEX-13O21-1926-SM-5MR39
50-59 years, male
10106.8
GTEX-1445S-2926-SM-5O993
60-69 years, male
9480.3
GTEX-13113-1526-SM-5EGHV
60-69 years, female
8817.1
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
8561.4
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
8460.2
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
8450.1
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
8298.2
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
7907.7
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
7820.2
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
7742.8
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
7579.3
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
7492.8
GTEX-Y111-2626-SM-4TT24
50-59 years, male
7397.1
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
7280.4
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
7041.4
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
6960.2
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
6852.9
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
6763.2
GTEX-11P82-0926-SM-5986X
20-29 years, male
6413.9
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
6131.4
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
6010.0
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
5936.3
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
5653.2
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
5027.1
GTEX-X261-2426-SM-4PQZU
50-59 years, male
5010.8
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
4948.4
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
4698.0
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
4693.9
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
4649.1
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
4481.0
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
4466.5
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
3200.9
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
3181.9
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
3011.0
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
2932.1
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
2922.3
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
2878.3
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
2695.1
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
2566.1
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
2453.0
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
2178.8
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
1997.9
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
1683.1
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
1599.6
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
1166.3
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
930.1
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
723.1
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
54.6
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.