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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in tubules: 60 Cells in glomeruli: 20 Fibroblasts: 5 Other cell types: 15
Female, age 67
Sample 2 TPM: 21.6
Cell types%
Cells in tubules: 70 Cells in glomeruli: 15 Fibroblasts: 10 Other cell types: 5
Female, age 55
Sample 3 TPM: 25.3
Cell types%
Cells in tubules: 80 Cells in glomeruli: 10 Fibroblasts: 5 Other cell types: 5
Male, age 46
Sample 4 TPM: 20.3
Cell types%
Cells in tubules: 60 Cells in glomeruli: 25 Fibroblasts: 5 Other cell types: 10
Female, age 57
Sample 5 TPM: 1.5
Cell types%
Cells in tubules: 60 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 6 TPM: 4.1
Cell types%
Cells in tubules: 65 Cells in glomeruli: 10 Fibroblasts: 5 Other cell types: 20
Male, age 73
Sample 7 TPM: 6.4
Cell types%
Cells in tubules: 60 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 20
Female, age 59
Sample 8 TPM: 7.8
Cell types%
Cells in tubules: 65 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 15
Female, age 48
Sample 9 TPM: 2.9
Cell types%
Cells in tubules: 60 Cells in glomeruli: 5 Fibroblasts: 10 Other cell types: 25
KIDNEY - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 50.6
Min RPKM: 11.3
Std RPKM: 11.9
Median RPKM: 23.1
GTEX-RN64-1626-SM-48FD7
50-59 years, male
50.6
GTEX-13112-2126-SM-5GCO4
50-59 years, male
48.6
GTEX-12696-0926-SM-5FQTV
60-69 years, male
48.2
GTEX-ZLFU-0926-SM-5P9F8
40-49 years, male
45.8
GTEX-ZYT6-2226-SM-5GIC9
30-39 years, male
44.6
GTEX-1399S-0526-SM-5IJG8
30-39 years, female
43.7
GTEX-13RTJ-2226-SM-5S2Q1
60-69 years, male
41.2
GTEX-145MN-0326-SM-5QGQI
30-39 years, male
38.8
GTEX-ZVZP-0926-SM-5GIDB
50-59 years, male
38.0
GTEX-13OVI-1126-SM-5KLZF
60-69 years, female
33.8
GTEX-13OVL-1826-SM-5KLZR
50-59 years, male
33.5
GTEX-ZYFG-1626-SM-5GZYY
60-69 years, female
30.9
GTEX-XPVG-0526-SM-4B65N
50-59 years, male
29.1
GTEX-1497J-0826-SM-5NQAJ
60-69 years, male
26.2
GTEX-T5JC-1526-SM-4DM68
20-29 years, male
25.6
GTEX-147F4-2626-SM-5Q5CS
50-59 years, male
23.4
GTEX-P4QS-1126-SM-3NMD5
60-69 years, male
22.7
GTEX-12WSG-0826-SM-5EQ5A
50-59 years, female
22.1
GTEX-UPIC-1126-SM-4IHLO
20-29 years, female
21.8
GTEX-QLQW-1626-SM-4R1K1
30-39 years, male
21.5
GTEX-N7MS-1626-SM-3LK5F
60-69 years, male
20.6
GTEX-NPJ8-2226-SM-3TW8D
40-49 years, male
20.1
GTEX-QDVN-1626-SM-48TZC
50-59 years, male
19.0
GTEX-Y5V6-2026-SM-5IFHO
60-69 years, male
18.9
GTEX-13OW6-1826-SM-5N9F9
50-59 years, male
17.1
GTEX-ZC5H-1726-SM-5HL7X
40-49 years, female
16.3
GTEX-11OF3-1326-SM-5N9FJ
60-69 years, male
16.2
GTEX-11TTK-1926-SM-5PNW8
60-69 years, female
15.4
GTEX-11GS4-2326-SM-5A5KS
60-69 years, male
15.2
GTEX-13NYB-1726-SM-5N9G2
40-49 years, male
14.4
GTEX-13O1R-2526-SM-5N9FW
60-69 years, male
12.2
GTEX-ZYFD-1526-SM-5NQ7T
50-59 years, male
11.3
Show all
KIDNEY - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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