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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 808.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1750.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 672.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1252.1
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1281
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 648.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 873.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1008.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 981.3
Min RPKM: 30.1
Std RPKM: 195.6
Median RPKM: 230.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
981.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
873.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
752.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
731.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
708.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
701.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
690.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
683.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
660.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
644.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
644.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
603.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
598.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
593.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
565.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
556.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
528.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
518.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
515.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
504.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
499.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
464.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
462.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
460.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
459.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
452.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
449.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
446.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
443.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
389.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
375.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
373.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
373.0
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
371.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
362.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
362.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
352.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
338.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
329.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
325.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
323.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
322.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
312.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
298.6
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
295.8
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
295.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
289.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
287.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
280.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
280.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
278.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
278.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
271.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
267.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
250.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
243.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
239.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
235.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
230.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
230.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
227.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
225.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
225.0
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
224.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
218.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
216.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
216.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
215.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
214.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
213.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
212.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
211.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
209.3
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
202.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
200.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
200.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
192.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
183.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
182.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
177.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
177.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
174.5
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
174.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
173.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
165.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
164.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
163.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
160.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
156.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
148.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
137.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
135.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
133.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
128.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
127.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
127.1
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
121.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
118.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
117.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
116.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
112.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
112.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
111.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
108.9
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
107.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
105.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
104.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
100.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
100.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
99.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
98.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
95.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
91.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
87.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
86.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
85.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
66.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
53.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
30.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.