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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 90.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 13.3
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 9.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 33.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 25.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 21.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 18.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 60.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1513.0
Min RPKM: 9.1
Std RPKM: 221.2
Median RPKM: 111.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
1513.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
1112.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
961.5
GTEX-REY6-1226-SM-48FDR
60-69 years, male
732.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
705.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
618.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
545.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
521.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
507.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
500.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
470.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
424.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
413.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
404.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
385.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
345.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
320.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
290.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
283.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
277.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
264.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
261.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
261.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
243.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
238.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
226.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
215.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
213.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
213.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
206.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
194.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
185.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
179.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
175.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
174.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
169.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
168.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
167.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
166.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
163.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
161.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
161.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
156.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
155.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
154.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
153.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
153.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
150.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
147.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
146.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
146.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
145.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
138.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
137.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
133.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
132.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
128.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
126.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
125.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
111.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
109.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
103.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
100.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
96.9
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
94.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
94.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
92.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
90.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
89.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
89.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
88.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
87.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
85.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
85.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
82.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
79.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
78.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
73.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
71.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
70.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
67.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
67.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
66.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
65.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
65.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
64.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
64.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
63.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
60.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
58.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
57.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
57.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
57.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
56.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
56.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
56.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
56.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
54.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
52.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
52.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
49.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
45.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
43.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
42.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
37.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
34.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
34.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
33.6
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
33.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
28.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
26.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
23.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
19.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
18.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
16.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
16.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
15.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
14.9
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
9.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
