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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 412.5
Min RPKM: 45.3
Std RPKM: 67.9
Median RPKM: 127.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
412.5
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
375.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
353.8
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
301.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
301.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
241.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
239.2
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
224.5
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
220.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
217.0
GTEX-13111-1426-SM-5DUW3
50-59 years, male
214.5
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
207.2
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
205.3
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
199.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
198.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
196.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
196.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
194.5
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
194.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
193.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
191.3
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
187.5
GTEX-1192X-2526-SM-59868
50-59 years, male
186.7
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
183.9
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
181.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
181.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
173.1
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
172.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
170.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
167.2
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
163.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
161.7
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
160.2
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
158.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
155.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
140.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
140.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
139.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
139.2
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
133.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
131.3
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
130.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
127.8
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
127.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
127.2
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
126.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
125.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
124.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
122.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
119.4
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
118.9
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
118.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
115.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
114.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
113.1
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
112.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
111.7
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
111.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
111.0
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
110.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
109.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
108.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
106.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
105.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
105.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
105.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
104.1
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
101.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
101.3
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
101.1
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
99.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
95.6
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
93.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
92.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
90.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
89.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
87.7
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
85.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
84.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
84.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
75.7
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
75.6
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
75.4
GTEX-1122O-1326-SM-5H11F
60-69 years, female
69.5
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
68.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
63.9
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
58.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
45.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.