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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 344.6
Min RPKM: 93.3
Std RPKM: 51.5
Median RPKM: 156.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
344.6
GTEX-1192X-2526-SM-59868
50-59 years, male
300.9
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
291.4
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
287.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
279.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
240.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
239.8
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
237.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
230.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
228.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
226.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
224.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
223.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
221.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
218.3
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
218.3
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
215.3
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
210.7
GTEX-117YX-0326-SM-5GICL
50-59 years, male
208.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
206.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
205.8
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
205.2
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
199.0
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
198.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
198.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
198.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
197.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
194.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
194.3
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
193.3
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
185.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
182.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
181.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
179.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
179.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
178.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
172.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
168.6
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
164.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
164.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
162.1
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
159.5
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
158.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
157.5
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
154.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
153.3
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
152.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
152.2
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
149.1
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
148.2
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
145.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
144.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
144.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
144.3
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
142.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
142.5
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
141.3
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
140.4
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
139.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
138.8
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
137.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
134.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
131.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
130.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
130.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
128.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
127.8
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
127.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
125.3
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
125.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
124.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
124.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
122.1
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
121.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
119.2
GTEX-ZTSS-0926-SM-59865
40-49 years, male
115.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
115.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
114.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
109.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
108.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
105.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
105.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
105.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
102.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
100.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
100.3
GTEX-1122O-1326-SM-5H11F
60-69 years, female
96.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
93.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.