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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 55.7
Min RPKM: 12.0
Std RPKM: 8.7
Median RPKM: 27.8
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
55.7
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
50.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
49.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
44.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
42.6
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
41.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
40.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
40.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
40.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
40.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
40.4
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
38.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
38.5
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
38.3
GTEX-1192X-2526-SM-59868
50-59 years, male
37.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
37.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
36.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
36.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
36.2
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
35.8
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
35.1
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
34.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
33.7
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
33.7
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
33.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
33.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
32.9
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
32.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
32.7
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
32.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
31.7
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
30.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
30.2
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
30.1
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
29.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
29.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
29.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
29.2
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
29.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
29.0
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
29.0
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
28.4
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
28.4
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
28.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
27.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
27.3
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
25.7
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
25.2
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
24.8
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
24.8
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
24.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
24.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
24.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
24.1
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
23.9
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
23.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
23.5
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
23.0
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
22.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
22.8
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
22.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
22.4
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
22.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
22.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
22.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
22.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
21.8
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
21.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
21.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
20.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
20.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
20.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
20.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
20.1
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
20.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
20.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
19.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
19.3
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
18.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
18.3
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
17.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
17.1
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
17.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
16.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
16.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
15.3
GTEX-1122O-1326-SM-5H11F
60-69 years, female
15.1
GTEX-111YS-1426-SM-5GID8
60-69 years, male
12.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.