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COLON - Expression summary
RNA expressioni
HPA:5.5TPM
GTEx:4.3RPKM
FANTOM5:30.7Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 5.5
overview Male, age 54 Sample 1
TPM: 4.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 4.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 5.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 8.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 5.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 7.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 5.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 7.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 4.3
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 5.1
Samples: 149

Max RPKM: 12.7
Min RPKM: 2.4
Std RPKM: 1.4
Median RPKM: 5.0
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 12.7
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 9.0
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 8.5
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 8.4
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 7.9
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 7.8
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 7.6
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 7.5
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 7.4
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 7.3
Show all
Colon - Transverse
RPKM: 3.7
Samples: 196

Max RPKM: 7.1
Min RPKM: 1.9
Std RPKM: 0.9
Median RPKM: 3.5
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 7.1
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 6.9
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 6.6
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 6.4
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 6.4
GTEX-ZY6K-1226-SM-5GZYL 50-59 years, male 6.2
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 6.1
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 6.0
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 5.9
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 5.8
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 30.7
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 19.4
FF:10014-101C5 62,83,84 years, mixed 30.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.