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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1173.8
Min RPKM: 346.7
Std RPKM: 128.0
Median RPKM: 586.4
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
1173.8
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
851.4
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
828.5
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
825.0
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
803.0
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
787.0
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
786.3
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
772.4
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
772.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
769.0
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
766.9
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
757.7
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
755.9
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
750.1
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
747.9
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
747.5
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
742.5
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
736.5
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
716.2
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
713.4
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
702.3
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
686.9
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
684.0
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
683.5
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
681.5
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
670.5
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
668.6
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
664.7
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
663.9
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
662.1
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
657.3
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
653.0
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
647.5
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
644.3
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
638.1
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
630.5
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
629.5
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
615.7
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
614.0
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
608.7
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
608.7
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
601.2
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
598.8
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
595.6
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
594.0
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
593.0
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
592.6
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
589.1
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
583.8
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
582.7
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
581.7
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
576.0
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
574.8
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
571.2
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
570.6
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
567.5
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
567.2
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
566.2
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
560.8
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
557.8
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
546.2
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
538.5
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
536.8
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
535.0
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
522.7
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
519.8
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
514.6
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
513.7
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
505.4
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
504.1
GTEX-11I78-2026-SM-5987C
50-59 years, female
501.3
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
500.6
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
500.6
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
489.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
484.2
GTEX-QCQG-1226-SM-48U23
50-59 years, female
483.1
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
478.8
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
478.8
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
477.1
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
476.3
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
473.5
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
473.4
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
471.8
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
471.5
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
470.1
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
466.3
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
456.9
GTEX-S341-1226-SM-4AD5S
40-49 years, female
447.5
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
445.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
445.1
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
443.3
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
439.8
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
437.8
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
434.1
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
402.1
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
346.7
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.