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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 851.5
Min RPKM: 128.2
Std RPKM: 135.5
Median RPKM: 397.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
851.5
GTEX-1192X-2526-SM-59868
50-59 years, male
739.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
632.8
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
622.6
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
597.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
587.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
582.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
563.6
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
559.0
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
557.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
557.5
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
551.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
544.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
542.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
528.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
508.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
508.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
504.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
502.3
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
494.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
486.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
485.8
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
480.7
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
478.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
475.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
475.4
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
474.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
474.1
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
473.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
470.5
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
469.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
468.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
466.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
463.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
455.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
452.3
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
451.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
441.8
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
439.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
437.7
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
430.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
429.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
419.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
397.6
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
397.3
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
396.3
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
392.9
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
385.4
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
380.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
372.7
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
369.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
354.7
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
354.5
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
352.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
346.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
344.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
343.5
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
328.8
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
321.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
319.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
303.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
300.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
297.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
296.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
296.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
287.1
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
286.0
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
281.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
279.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
269.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
265.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
264.7
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
248.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
241.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
240.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
237.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
231.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
230.2
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
230.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
228.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
215.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
212.3
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
212.1
GTEX-ZTSS-0926-SM-59865
40-49 years, male
207.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
201.1
GTEX-1122O-1326-SM-5H11F
60-69 years, female
193.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
180.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
128.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.