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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 714.4
Min RPKM: 321.8
Std RPKM: 92.3
Median RPKM: 473.0
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
714.4
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
712.9
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
704.7
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
637.5
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
613.2
GTEX-13113-1526-SM-5EGHV
60-69 years, female
611.1
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
603.1
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
593.6
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
580.5
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
579.1
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
572.0
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
570.2
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
564.6
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
542.8
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
535.8
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
534.0
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
532.8
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
531.2
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
515.3
GTEX-Y111-2626-SM-4TT24
50-59 years, male
512.8
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
510.7
GTEX-1445S-2926-SM-5O993
60-69 years, male
508.5
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
500.9
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
499.1
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
497.8
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
488.2
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
475.6
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
473.6
GTEX-11P82-0926-SM-5986X
20-29 years, male
473.0
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
465.0
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
460.9
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
459.4
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
446.2
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
444.1
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
443.2
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
435.7
GTEX-13O21-1926-SM-5MR39
50-59 years, male
433.2
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
432.6
GTEX-X261-2426-SM-4PQZU
50-59 years, male
431.8
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
430.4
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
428.3
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
423.3
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
417.4
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
409.0
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
408.0
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
399.4
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
398.5
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
398.5
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
395.2
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
392.9
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
391.9
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
389.9
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
375.7
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
364.4
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
343.0
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
332.4
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
321.8
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.