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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1555.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1715.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1264.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 2090.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 2223
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1070.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 1583.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 3196.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 777.9
Min RPKM: 38.5
Std RPKM: 146.5
Median RPKM: 183.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
777.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
704.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
678.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
654.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
547.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
506.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
506.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
505.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
466.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
443.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
443.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
418.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
407.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
405.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
402.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
401.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
394.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
391.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
390.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
371.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
360.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
345.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
345.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
340.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
335.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
331.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
329.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
321.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
311.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
301.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
297.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
286.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
285.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
281.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
280.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
275.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
274.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
271.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
266.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
252.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
243.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
234.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
234.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
231.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
228.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
226.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
221.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
219.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
216.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
211.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
211.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
207.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
206.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
205.2
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
198.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
192.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
192.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
189.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
185.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
183.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
179.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
178.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
171.6
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
167.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
165.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
159.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
158.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
156.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
153.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
152.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
147.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
145.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
145.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
144.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
144.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
140.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
139.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
138.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
136.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
136.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
134.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
134.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
131.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
131.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
130.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
126.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
124.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
121.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
120.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
119.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
119.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
118.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
118.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
117.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
115.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
113.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
111.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
110.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
108.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
108.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
105.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
102.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
101.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
101.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
97.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
97.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
95.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
89.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
86.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
85.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
84.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
82.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
80.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
76.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
73.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
64.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
64.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
58.9
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
38.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.