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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 741
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 118.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 119.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 460.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 544.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 476.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 325.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 498.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 705.9
Min RPKM: 46.7
Std RPKM: 102.9
Median RPKM: 234.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
705.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
582.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
551.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
507.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
473.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
451.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
445.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
435.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
417.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
404.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
403.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
391.0
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
376.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
369.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
364.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
361.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
347.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
344.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
343.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
324.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
316.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
315.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
298.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
296.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
291.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
291.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
285.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
284.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
282.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
272.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
272.5
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
268.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
267.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
266.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
266.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
264.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
263.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
262.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
262.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
261.5
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
258.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
257.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
254.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
253.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
250.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
249.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
248.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
246.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
245.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
245.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
244.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
243.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
239.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
239.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
238.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
238.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
236.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
236.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
235.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
234.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
234.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
233.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
232.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
230.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
225.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
223.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
223.6
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
220.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
216.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
214.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
208.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
204.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
204.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
204.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
201.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
200.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
199.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
198.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
197.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
196.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
195.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
192.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
191.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
191.0
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
189.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
184.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
183.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
181.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
178.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
178.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
176.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
174.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
170.9
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
170.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
170.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
169.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
169.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
168.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
167.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
162.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
159.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
159.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
157.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
156.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
155.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
154.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
151.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
151.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
146.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
145.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
140.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
139.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
139.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
123.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
114.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
108.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
90.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
76.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
46.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.