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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 78.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 12.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 12.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 18.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 19.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 50.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 32.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 69.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 342.7
Min RPKM: 37.3
Std RPKM: 63.8
Median RPKM: 112.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
342.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
331.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
289.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
273.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
259.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
253.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
252.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
250.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
239.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
223.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
220.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
218.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
215.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
215.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
208.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
204.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
203.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
201.6
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
196.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
193.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
189.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
185.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
181.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
180.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
173.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
172.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
171.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
167.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
166.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
164.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
158.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
156.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
154.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
148.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
145.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
145.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
144.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
142.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
140.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
139.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
138.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
137.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
137.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
137.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
135.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
130.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
128.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
128.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
127.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
125.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
123.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
121.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
121.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
120.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
119.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
118.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
116.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
115.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
113.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
112.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
110.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
109.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
107.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
107.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
104.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
103.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
103.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
100.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
100.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
98.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
98.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
96.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
94.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
94.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
93.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
93.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
92.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
91.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
90.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
90.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
89.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
87.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
86.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
86.9
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
86.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
86.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
85.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
83.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
82.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
82.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
82.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
80.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
78.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
77.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
76.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
74.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
74.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
70.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
69.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
68.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
66.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
66.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
66.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
65.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
63.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
62.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
60.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
60.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
57.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
55.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
49.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
47.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
46.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
44.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
44.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
42.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
39.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
38.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
37.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.