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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1616.6
Min RPKM: 48.6
Std RPKM: 290.7
Median RPKM: 373.6
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
1616.6
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
1296.6
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
1281.5
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
1162.2
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
1067.8
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
901.9
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
896.9
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
879.9
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
869.7
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
864.3
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
843.4
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
783.8
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
751.6
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
682.4
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
679.6
GTEX-11I78-2026-SM-5987C
50-59 years, female
650.9
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
638.0
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
635.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
632.0
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
611.7
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
608.9
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
605.4
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
590.6
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
570.0
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
569.5
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
568.8
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
559.8
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
553.4
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
553.3
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
551.7
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
547.6
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
536.6
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
534.2
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
525.3
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
488.5
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
485.6
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
471.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
454.7
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
450.8
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
446.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
435.9
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
432.9
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
406.4
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
406.0
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
393.3
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
392.6
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
391.9
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
375.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
372.1
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
364.9
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
355.6
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
348.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
342.4
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
340.9
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
335.5
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
334.5
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
309.8
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
309.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
306.7
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
303.6
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
296.9
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
291.9
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
288.6
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
283.0
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
273.0
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
272.1
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
261.9
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
252.1
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
250.5
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
247.3
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
246.8
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
246.7
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
241.8
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
232.9
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
232.4
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
231.8
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
229.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
227.6
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
219.4
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
215.2
GTEX-QCQG-1226-SM-48U23
50-59 years, female
192.1
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
189.1
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
176.7
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
176.4
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
171.5
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
162.2
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
148.1
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
134.7
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
130.7
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
102.6
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
92.2
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
87.2
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
85.3
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
59.2
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
53.6
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
48.6
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.