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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 383.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 171
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 85
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 90.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 228.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 97.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 224.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 174.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 763.5
Min RPKM: 23.9
Std RPKM: 178.7
Median RPKM: 200.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
763.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
733.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
655.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
640.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
605.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
575.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
554.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
537.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
537.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
521.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
519.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
509.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
509.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
507.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
493.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
491.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
483.9
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
475.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
467.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
467.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
454.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
440.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
416.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
409.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
407.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
405.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
374.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
373.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
372.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
369.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
354.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
346.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
339.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
336.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
326.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
316.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
304.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
304.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
302.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
298.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
291.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
290.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
286.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
271.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
268.1
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
267.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
262.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
262.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
252.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
246.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
246.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
245.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
238.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
231.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
224.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
214.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
212.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
212.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
203.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
200.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
199.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
191.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
189.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
187.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
186.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
177.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
164.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
161.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
159.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
150.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
140.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
139.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
135.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
133.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
132.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
125.6
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
124.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
122.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
120.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
117.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
112.9
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
111.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
108.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
106.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
97.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
89.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
86.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
86.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
85.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
84.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
82.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
81.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
76.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
76.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
76.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
74.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
73.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
72.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
71.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
69.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
66.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
65.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
65.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
65.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
59.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
57.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
53.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
52.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
51.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
50.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
46.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
42.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
41.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
40.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
33.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
30.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
26.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
26.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
23.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.