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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 142.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 297.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 95.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 195.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 183.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 153.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 176
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 190
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 315.6
Min RPKM: 8.4
Std RPKM: 65.5
Median RPKM: 91.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
315.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
302.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
276.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
262.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
242.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
234.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
225.5
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
224.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
221.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
219.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
209.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
199.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
198.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
193.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
191.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
190.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
183.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
181.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
177.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
169.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
167.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
166.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
165.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
165.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
161.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
159.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
159.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
155.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
153.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
153.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
149.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
149.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
147.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
140.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
138.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
130.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
129.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
128.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
127.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
125.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
121.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
116.2
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
116.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
115.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
113.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
112.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
112.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
111.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
108.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
108.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
107.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
102.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
101.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
100.5
GTEX-QESD-2026-SM-447BI
20-29 years, male
97.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
96.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
95.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
93.5
GTEX-RU72-1426-SM-46MUF
50-59 years, female
92.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
91.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
89.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
85.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
84.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
80.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
79.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
79.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
78.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
77.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
77.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
74.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
72.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
71.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
70.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
70.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
69.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
67.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
67.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
67.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
65.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
65.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
63.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
63.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
62.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
61.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
60.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
60.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
59.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
58.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
56.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
55.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
53.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
51.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
51.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
50.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
49.4
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
49.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
47.7
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
46.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
46.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
45.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
45.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
42.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
40.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
39.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
38.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
37.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
37.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
36.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
35.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
35.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
35.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
34.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
32.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
32.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
31.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
29.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
29.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
27.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
8.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.