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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 659.6
Min RPKM: 1.1
Std RPKM: 179.0
Median RPKM: 204.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
659.6
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
621.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
602.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
596.7
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
594.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
571.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
560.9
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
526.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
515.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
484.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
480.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
470.7
GTEX-1122O-1326-SM-5H11F
60-69 years, female
463.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
460.6
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
443.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
433.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
429.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
428.4
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
424.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
413.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
402.7
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
401.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
387.5
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
384.6
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
375.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
374.7
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
365.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
364.0
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
361.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
346.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
340.1
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
338.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
328.6
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
316.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
313.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
278.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
277.6
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
253.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
238.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
237.6
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
229.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
226.3
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
219.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
209.9
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
199.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
198.8
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
198.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
192.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
184.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
182.5
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
182.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
174.6
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
171.5
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
169.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
159.7
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
158.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
158.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
156.3
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
151.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
150.5
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
148.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
144.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
142.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
135.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
117.6
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
117.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
115.4
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
97.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
87.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
84.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
77.8
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
72.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
68.5
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
63.3
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
61.4
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
28.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
26.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
24.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
21.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
20.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
17.7
GTEX-117YX-0326-SM-5GICL
50-59 years, male
7.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
7.3
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
6.5
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
4.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
3.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
3.1
GTEX-1192X-2526-SM-59868
50-59 years, male
1.1
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.